Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NA29_RS03020 Genome accession   NZ_CP010431
Coordinates   658171..658683 (+) Length   170 a.a.
NCBI ID   WP_039395618.1    Uniprot ID   A0A5E4WVR7
Organism   Pandoraea sputorum strain DSM 21091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 659602..673277 658171..658683 flank 919


Gene organization within MGE regions


Location: 658171..673277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NA29_RS03020 (NA29_07285) ssb 658171..658683 (+) 513 WP_039395618.1 single-stranded DNA-binding protein Machinery gene
  NA29_RS03025 (NA29_07290) - 659176..659412 (-) 237 WP_039395621.1 helix-turn-helix domain-containing protein -
  NA29_RS26205 - 660372..660506 (+) 135 WP_257125715.1 hypothetical protein -
  NA29_RS03035 (NA29_07300) - 661119..661928 (+) 810 WP_052252472.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  NA29_RS03040 (NA29_07305) - 661939..663126 (+) 1188 WP_039395624.1 metallophosphoesterase -
  NA29_RS03045 (NA29_07310) - 663123..664994 (+) 1872 WP_039395627.1 hypothetical protein -
  NA29_RS03050 (NA29_07315) - 664996..665937 (+) 942 WP_039395630.1 hypothetical protein -
  NA29_RS03055 - 665995..667188 (+) 1194 WP_072633180.1 helix-turn-helix domain-containing protein -
  NA29_RS03060 (NA29_07330) - 668017..669273 (+) 1257 WP_039395639.1 site-specific integrase -
  NA29_RS03065 (NA29_07335) - 669257..670792 (+) 1536 WP_039395642.1 site-specific integrase -
  NA29_RS03070 (NA29_07340) - 670789..672804 (+) 2016 WP_039395645.1 integrase -
  NA29_RS03075 (NA29_07345) - 672801..673277 (+) 477 WP_072633181.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17831.56 Da        Isoelectric Point: 5.3258

>NTDB_id=137043 NA29_RS03020 WP_039395618.1 658171..658683(+) (ssb) [Pandoraea sputorum strain DSM 21091]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGGDEGGGGGYSRGGGGGGGGARQQAPAKQSGGG
FDDMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=137043 NA29_RS03020 WP_039395618.1 658171..658683(+) (ssb) [Pandoraea sputorum strain DSM 21091]
ATGGCATCAGTCAACAAAGTGATTCTGGTCGGCAATCTGGGTGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTTGCGAACATTCGTCTGGCGACGACAGACCGTTACAAGGACAAGCAGTCCGGCGAATTCAAGGAAATGACGGAATGGC
ACCGTGTGTCGTTCTTCGGCCGTCTGGCTGAGATCGTCAACGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGGC
CGTATCCGTACGCGCAAGTACCAGGCGCAGGACGGCACGGAGCGCTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTAGCGGCGGCGGCGAAGGTGGCGGCGGTGGCGGCTACTCGCGCGGCGGTGGTGGTGACGAAGGCGGTG
GCGGCGGTTACTCGCGAGGCGGTGGTGGTGGCGGCGGCGGTGCCCGTCAGCAAGCCCCGGCCAAGCAGTCCGGCGGCGGC
TTCGACGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4WVR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.111

100

0.541
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.524
  ssb Neisseria meningitidis MC58

45.763

100

0.476
  ssb Neisseria gonorrhoeae MS11

45.763

100

0.476
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.64

100

0.394

Multiple sequence alignment