Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LI64_RS01750 Genome accession   NZ_CP010377
Coordinates   365768..366298 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. hormaechei strain 34983     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 360768..371298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI64_RS01730 (LI64_01730) aphA 361092..361805 (+) 714 WP_039272948.1 acid phosphatase AphA -
  LI64_RS01735 (LI64_01735) - 361918..362334 (+) 417 WP_032673703.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LI64_RS01740 (LI64_01740) - 362337..362690 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  LI64_RS01745 (LI64_01745) uvrA 362694..365516 (-) 2823 WP_006810471.1 excinuclease ABC subunit UvrA -
  LI64_RS01750 (LI64_01750) ssb 365768..366298 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LI64_RS01755 (LI64_01755) - 366360..366641 (-) 282 WP_022646751.1 YjcB family protein -
  LI64_RS01760 (LI64_01760) - 367301..368866 (+) 1566 WP_039272953.1 EAL domain-containing protein -
  LI64_RS01765 (LI64_01765) soxS 368873..369199 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  LI64_RS01770 (LI64_01770) soxR 369298..369756 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  LI64_RS01775 (LI64_01775) - 370113..370784 (+) 672 WP_006810467.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=136689 LI64_RS01750 WP_006810470.1 365768..366298(+) (ssb) [Enterobacter hormaechei subsp. hormaechei strain 34983]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=136689 LI64_RS01750 WP_006810470.1 365768..366298(+) (ssb) [Enterobacter hormaechei subsp. hormaechei strain 34983]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCAACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTAAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369

Multiple sequence alignment