Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   AO356_RS00355 Genome accession   NZ_CP012831
Coordinates   70178..70819 (-) Length   213 a.a.
NCBI ID   WP_003200277.1    Uniprot ID   A0ABM6R0Z3
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 65178..75819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS00335 (AO356_00335) - 65556..67397 (-) 1842 WP_048392768.1 tyrosine-type recombinase/integrase -
  AO356_RS00345 (AO356_00345) pgsA 67759..68319 (-) 561 WP_030141409.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AO356_RS00350 (AO356_00350) uvrC 68352..70175 (-) 1824 WP_060738088.1 excinuclease ABC subunit UvrC -
  AO356_RS00355 (AO356_00355) letA 70178..70819 (-) 642 WP_003200277.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  AO356_RS00360 (AO356_00360) - 70947..71381 (-) 435 WP_060738089.1 GNAT family N-acetyltransferase -
  AO356_RS00365 (AO356_00365) - 71389..72150 (-) 762 WP_060738090.1 carbon-nitrogen hydrolase family protein -
  AO356_RS00370 (AO356_00370) - 72765..73835 (+) 1071 WP_060738091.1 3-deoxy-7-phosphoheptulonate synthase -
  AO356_RS00375 (AO356_00375) - 73992..75053 (-) 1062 WP_237140789.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23343.23 Da        Isoelectric Point: 6.2490

>NTDB_id=136683 AO356_RS00355 WP_003200277.1 70178..70819(-) (letA) [Pseudomonas fluorescens strain FW300-N2C3]
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLEATRKLLRSHPDIKVVA
VTVCEEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTNDSPFDALSEREIQIALMI
VGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMVDASA

Nucleotide


Download         Length: 642 bp        

>NTDB_id=136683 AO356_RS00355 WP_003200277.1 70178..70819(-) (letA) [Pseudomonas fluorescens strain FW300-N2C3]
TTGATTAGGGTGTTAGTGGTCGATGACCATGATCTCGTCCGTACGGGCATTACACGAATGCTGGCTGACATCGACGGCCT
GCAGGTAGTTGGTCAGGCTGAATCCGGGGAAGAGTCCCTGATCAAGGCACGTGAATTGAAACCCGACGTGGTATTGATGG
ACGTCAAGATGCCTGGCATCGGCGGCCTTGAAGCCACGCGCAAGCTGCTGCGCAGTCACCCGGACATCAAGGTGGTCGCG
GTAACCGTCTGCGAAGAGGACCCATTCCCCACCCGGCTGTTGCAAGCGGGCGCGGCGGGCTACCTCACCAAGGGCGCTGG
CTTGAACGAAATGGTCCAGGCCATTCGTCTGGTTTTTGCCGGGCAACGCTACATCAGCCCGCAAATCGCCCAGCAGTTGG
CGATCAAGTCGTTCCAGCCGACCAACGATTCGCCTTTCGATGCGCTGTCGGAACGGGAAATCCAGATTGCCCTGATGATT
GTCGGTTGCCAGAAGGTACAGATCATCTCCGACAAGCTGTGCCTGTCCCCCAAGACCGTCAACACCTACCGTTACCGTAT
CTTCGAGAAGCTTTCGATCAGCAGTGACGTCGAATTGACACTGTTGGCGGTGCGCCACGGCATGGTCGATGCCAGCGCCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

56.667

98.592

0.559
  letA Legionella pneumophila strain ERS1305867

56.667

98.592

0.559

Multiple sequence alignment