Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RR32_RS16965 Genome accession   NZ_CP010368
Coordinates   3610760..3612247 (+) Length   495 a.a.
NCBI ID   WP_022575132.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3605760..3617247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS16940 (RR32_16945) ribD 3606686..3607771 (-) 1086 WP_022575134.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  RR32_RS16945 (RR32_16950) nrdR 3607787..3608245 (-) 459 WP_004710970.1 transcriptional regulator NrdR -
  RR32_RS16950 (RR32_16955) - 3608406..3609791 (-) 1386 WP_022575133.1 ammonium transporter -
  RR32_RS16955 (RR32_16960) glnK 3609849..3610187 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  RR32_RS16960 (RR32_16965) - 3610467..3610694 (+) 228 WP_002048939.1 accessory factor UbiK family protein -
  RR32_RS16965 (RR32_16970) comM 3610760..3612247 (+) 1488 WP_022575132.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RR32_RS16970 (RR32_16975) - 3612277..3613701 (-) 1425 WP_031225041.1 PLP-dependent aminotransferase family protein -
  RR32_RS16975 (RR32_16980) - 3613813..3614589 (+) 777 WP_022575131.1 aldolase -
  RR32_RS16980 (RR32_16985) - 3614605..3615483 (+) 879 WP_022575130.1 dihydrodipicolinate synthase family protein -
  RR32_RS16985 (RR32_16990) - 3615526..3616347 (-) 822 WP_002048960.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54654.59 Da        Isoelectric Point: 7.7314

>NTDB_id=136636 RR32_RS16965 WP_022575132.1 3610760..3612247(+) (comM) [Acinetobacter nosocomialis strain 6411]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPISGALTLAMACQQAQHKIVLPQDNSQDISHLPNLECYPVSHL
KEVCEHFLGNTKLSQVQSSSRSNYMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHIFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQIKRQDCLNQALSPKQLEQFAALDNASQRMIEMAQQRLNLSARAYHRVLRVARTIADLSQSEMIQ
SHHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=136636 RR32_RS16965 WP_022575132.1 3610760..3612247(+) (comM) [Acinetobacter nosocomialis strain 6411]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGCTTACATGCGCCTCTCATTGAAGTAGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTAACGATCGTAGGGCTTGCTGAAGCAGCAGTCAGGGAGAGTAAGGACAGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAGTTTCCGACTAAACGGCTGACTATTAATCTTGCTCCCGCAGATTTGCCCAAAGATGGTTCACGT
TTAGATTTACCGATTGCATTAGGGATATTAATTGCCTCAGGTCAGCTTCCAGAGAACTGCACTGAAGACTTTGAATTTAT
TGGAGAGTTAGCACTAGATGGTCATGTAAGACCTATTTCAGGTGCTTTAACTTTGGCAATGGCCTGCCAACAAGCCCAGC
ATAAAATTGTTTTACCCCAAGATAATAGTCAGGATATTAGTCATTTACCAAATCTTGAGTGTTATCCGGTTAGTCATTTA
AAAGAAGTTTGTGAACACTTTTTAGGAAATACCAAGCTATCTCAGGTGCAATCATCTTCCCGCTCAAATTACATGCCGTA
CAAATTTGACCTTGCAGATGTAAAAGGTCAGCTACGCCCACGTCGTGCACTGGAAATTGCAGCCGCTGGAGGGCACTCCC
TGCTCTTTAAAGGACCACCGGGTACAGGTAAGACTTTACTCGCCTCACGTCTTCCTTCAATTTTACCACCACTTTCTACT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCGATTTCAAATACACCGCATATTTTTGGACAGCGCCCTTTTCGTGCACC
CCACCATACAGCCTCAGCAATTGCACTAGTTGGGGGCGGTTCTCATCCTAAACCGGGTGAAATTACCTTATCTCACTTAG
GGGTTCTATTCTTAGATGAATTACCCGAGTTTGATCGCAAAGTATTAGAAGTCTTACGCCAGCCGCTTGAGTCAAAAGAA
ATTATCATTTCACGGGCAGCCCGGCAAATTACCTATCCTGCCAACTTTCAGCTTATAGCAGCGATGAACCCCTGCCCATG
TGGTTACGCATTTAATCAAGACAGTCGTTGTCAGTGTTCGCCCGAAAGTATTAAACGTTATCAGAACCGTATATCGGGGC
CATTACTTGACCGCATCGATTTACATATCGATGTACCGCCATTAAAAGCTCAGGAACTACAAGATCCAACACCCGCCGAA
GATTCAACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATAAAAAGGCAGGATTGTTTGAATCAGGCACT
TTCACCGAAACAATTAGAACAATTCGCTGCCCTAGATAACGCGTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCACGTGCTTATCATCGTGTTTTACGGGTTGCTCGCACCATTGCCGATTTGTCTCAAAGTGAGATGATTCAA
AGTCATCACCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.4

100

0.509
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Legionella pneumophila str. Paris

48.394

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.394

100

0.487
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.4

100

0.479

Multiple sequence alignment