Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RO07_RS02995 Genome accession   NZ_CP010310
Coordinates   666958..667467 (+) Length   169 a.a.
NCBI ID   WP_039407932.1    Uniprot ID   A0AAJ4ZBX3
Organism   Pandoraea pulmonicola strain DSM 16583     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 661958..672467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO07_RS02985 (RO07_11455) uvrA 662429..665293 (-) 2865 WP_039407925.1 excinuclease ABC subunit UvrA -
  RO07_RS02990 (RO07_11460) - 665764..666927 (+) 1164 WP_052266975.1 MFS transporter -
  RO07_RS02995 (RO07_11465) ssb 666958..667467 (+) 510 WP_039407932.1 single-stranded DNA-binding protein Machinery gene
  RO07_RS03000 (RO07_11470) - 667613..668272 (+) 660 WP_039414080.1 GntR family transcriptional regulator -
  RO07_RS03005 (RO07_11475) - 668470..669930 (-) 1461 WP_237171363.1 amidase -
  RO07_RS03010 (RO07_11480) - 669988..671280 (-) 1293 WP_052266976.1 MFS transporter -
  RO07_RS03015 (RO07_11485) - 671377..672366 (+) 990 WP_052266977.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17746.45 Da        Isoelectric Point: 5.3177

>NTDB_id=136200 RO07_RS02995 WP_039407932.1 666958..667467(+) (ssb) [Pandoraea pulmonicola strain DSM 16583]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGDEGGGGGYSRGGGGGGGGGGRQQAPAKQSGGF
DDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=136200 RO07_RS02995 WP_039407932.1 666958..667467(+) (ssb) [Pandoraea pulmonicola strain DSM 16583]
ATGGCATCAGTCAACAAAGTCATTTTGGTCGGCAATCTCGGCGCCGATCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAGAGCGGCGAGTTCAAGGAGATGACGGAGTGGC
ACCGCGTGTCGTTCTTCGGTCGTCTTGCCGAGATCGTCAACGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGGC
CGCATCCGCACGCGCAAGTACCAGGCGCAGGATGGCACGGACCGTTACAGCACAGAAATCGTGGCTGACCAGATGCAGAT
GCTTGGCGGCCGCAGCGGTGGCGGTGAAGGCGGCGGTGGCGGCGGTTATTCGCGCGGCGGCGGTGACGAAGGCGGCGGTG
GCGGCTATTCGCGCGGTGGTGGTGGCGGCGGCGGTGGTGGTGGTCGCCAGCAGGCCCCGGCCAAGCAGTCCGGCGGCTTC
GACGACATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.55
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.527
  ssb Neisseria meningitidis MC58

44.693

100

0.473
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.473
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.813

100

0.396

Multiple sequence alignment