Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   RN86_RS11220 Genome accession   NZ_CP012648
Coordinates   650008..650172 (+) Length   54 a.a.
NCBI ID   WP_080998577.1    Uniprot ID   O33645
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 645008..655172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS03020 (RN86_03015) dnaA 645470..646822 (-) 1353 WP_053794273.1 chromosomal replication initiator protein DnaA -
  RN86_RS03025 (RN86_03020) spo0J 647026..647790 (-) 765 WP_045504981.1 ParB/RepB/Spo0J family partition protein Regulator
  RN86_RS03030 (RN86_03025) htrA 647856..649049 (-) 1194 WP_045504979.1 S1C family serine protease Regulator
  RN86_RS03035 (RN86_03030) rlmH 649243..649722 (+) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RN86_RS11220 comC/comC1 650008..650172 (+) 165 WP_080998577.1 bacteriocin Regulator
  RN86_RS03050 (RN86_03045) comD/comD2 650185..651546 (+) 1362 WP_052721528.1 competence system sensor histidine kinase ComD Regulator
  RN86_RS03055 (RN86_03050) comE/comE2 651543..652310 (+) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  RN86_RS03070 (RN86_03065) ychF 652632..653747 (+) 1116 WP_008808030.1 redox-regulated ATPase YchF -
  RN86_RS03075 (RN86_03070) pth 653821..654390 (+) 570 WP_046164770.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6369.44 Da        Isoelectric Point: 11.2504

>NTDB_id=135530 RN86_RS11220 WP_080998577.1 650008..650172(+) (comC/comC1) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKKKNKQNLLPKELQQFEILTDNKLQTVIGGSQKGVYASQRSFVPSWFRKIFRN

Nucleotide


Download         Length: 165 bp        

>NTDB_id=135530 RN86_RS11220 WP_080998577.1 650008..650172(+) (comC/comC1) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAAAAGAAAAACAAACAAAATCTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGATAATAAACTTCAAAC
AGTCATTGGGGGATCTCAAAAAGGTGTTTATGCCAGTCAGAGATCATTTGTTCCAAGTTGGTTCCGTAAAATTTTTAGAA
ATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O33645

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus gordonii str. Challis substr. CH1

55.556

100

0.556
  comC/comC2 Streptococcus gordonii strain NCTC7865

81.25

59.259

0.481