Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG49_RS16070 Genome accession   NZ_CP010171
Coordinates   2959493..2959978 (-) Length   161 a.a.
NCBI ID   WP_000157061.1    Uniprot ID   A0AAU7IP99
Organism   Escherichia coli strain H7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2947158..2968691 2959493..2959978 within 0


Gene organization within MGE regions


Location: 2947158..2968691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG49_RS26730 (RG49_14815) rhuM 2948317..2948478 (-) 162 Protein_2834 RhuM family protein -
  RG49_RS16005 (RG49_14820) - 2948712..2949257 (-) 546 Protein_2835 DUF4942 domain-containing protein -
  RG49_RS16025 (RG49_14825) - 2949313..2950010 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  RG49_RS16030 (RG49_14830) - 2950079..2953576 (-) 3498 WP_001035793.1 autotransporter outer membrane beta-barrel domain-containing protein -
  RG49_RS16040 (RG49_14835) - 2953855..2954235 (-) 381 Protein_2838 integrase core domain-containing protein -
  RG49_RS26410 - 2954855..2955010 (+) 156 WP_000074142.1 hypothetical protein -
  RG49_RS16050 (RG49_14840) - 2955059..2955514 (+) 456 Protein_2840 hypothetical protein -
  RG49_RS16060 (RG49_14855) - 2955550..2956763 (+) 1214 WP_085950468.1 IS3-like element ISEc31 family transposase -
  RG49_RS26415 - 2956915..2957082 (+) 168 WP_001300931.1 hypothetical protein -
  RG49_RS16065 (RG49_14865) trbC 2957118..2959439 (-) 2322 WP_001164055.1 F-type conjugative transfer protein TrbC -
  RG49_RS16070 (RG49_14870) ssb 2959493..2959978 (-) 486 WP_000157061.1 single-stranded DNA-binding protein Machinery gene
  RG49_RS16075 (RG49_14875) - 2960626..2963007 (-) 2382 WP_001313395.1 glycoside hydrolase family 31 protein -
  RG49_RS16080 (RG49_14880) - 2963022..2964323 (-) 1302 WP_001329026.1 MFS transporter -
  RG49_RS16085 (RG49_14885) - 2964585..2965655 (+) 1071 WP_000412404.1 LacI family DNA-binding transcriptional regulator -
  RG49_RS16095 (RG49_14890) - 2966053..2967096 (-) 1044 WP_000999851.1 hypothetical protein -
  RG49_RS16100 (RG49_14895) - 2967507..2968691 (-) 1185 WP_001218910.1 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17685.62 Da        Isoelectric Point: 7.2017

>NTDB_id=134793 RG49_RS16070 WP_000157061.1 2959493..2959978(-) (ssb) [Escherichia coli strain H7]
MASKGINKVILIGYLGQDPDIRYMPNGGAVASIALATSETWRDKQTGEMREQTEWHRVVLFGKLAEVASEYLRKGAQVYI
DGQLRTRKWTDQTGQERYTTEVVVHTGGTMQMLGSRQNSAQGGRGQPQQPQQGRQFSGNSPSPGNTAMSGSFSDDDDSIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=134793 RG49_RS16070 WP_000157061.1 2959493..2959978(-) (ssb) [Escherichia coli strain H7]
ATGGCCTCTAAAGGTATTAACAAAGTTATTCTGATAGGGTATCTGGGTCAGGACCCGGATATTCGCTATATGCCAAACGG
CGGCGCTGTGGCCAGCATTGCGCTGGCCACCTCCGAAACCTGGCGGGACAAACAGACAGGGGAGATGCGGGAACAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGTGAATACCTGCGCAAAGGAGCTCAGGTGTACATC
GATGGTCAGCTGCGTACCCGAAAATGGACCGACCAGACCGGCCAGGAACGCTACACGACTGAAGTGGTGGTGCATACCGG
CGGTACCATGCAGATGCTGGGCTCCCGGCAGAATAGTGCACAGGGTGGCCGGGGACAGCCTCAACAACCACAACAGGGCA
GACAGTTTTCAGGTAATTCGCCATCTCCGGGCAATACCGCCATGTCCGGCAGTTTCAGCGACGATGACGACAGTATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.646
  ssb Glaesserella parasuis strain SC1401

52.632

94.41

0.497
  ssb Neisseria meningitidis MC58

41.477

100

0.453
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.402

100

0.36

Multiple sequence alignment