Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG27_RS25075 Genome accession   NZ_CP010121
Coordinates   4878689..4879225 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain C4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4873689..4884225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG27_RS25050 (RG27_23845) soxR 4875417..4875881 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  RG27_RS25055 (RG27_23850) soxS 4875967..4876290 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RG27_RS25060 (RG27_23855) pdeC 4876293..4877879 (-) 1587 WP_073462028.1 c-di-GMP phosphodiesterase PdeC -
  RG27_RS25070 (RG27_23860) yjcB 4878309..4878590 (+) 282 WP_001295689.1 YjcB family protein -
  RG27_RS25075 (RG27_23865) ssb 4878689..4879225 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RG27_RS25080 (RG27_23870) uvrA 4879480..4882302 (+) 2823 WP_000357731.1 excinuclease ABC subunit UvrA -
  RG27_RS25085 (RG27_23875) yjbR 4882337..4882693 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RG27_RS25090 (RG27_23880) yjbQ 4882697..4883113 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RG27_RS25095 (RG27_23885) aphA 4883224..4883937 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=134359 RG27_RS25075 WP_000168305.1 4878689..4879225(-) (ssb) [Escherichia coli strain C4]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=134359 RG27_RS25075 WP_000168305.1 4878689..4879225(-) (ssb) [Escherichia coli strain C4]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGTGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment