Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FORC9_RS09925 Genome accession   NZ_CP009984
Coordinates   2178556..2178858 (-) Length   100 a.a.
NCBI ID   WP_013572179.1    Uniprot ID   A0AAN1PPQ8
Organism   Vibrio vulnificus strain FORC_009     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2173556..2183858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC9_RS09900 (FORC9_1936) - 2174099..2175313 (+) 1215 WP_011080966.1 pyridoxal phosphate-dependent aminotransferase -
  FORC9_RS09905 (FORC9_1937) yfbR 2175394..2175978 (+) 585 WP_060532983.1 5'-deoxynucleotidase -
  FORC9_RS09910 (FORC9_1938) - 2175984..2177315 (+) 1332 WP_060532176.1 anti-phage deoxyguanosine triphosphatase -
  FORC9_RS09915 (FORC9_1939) - 2177337..2177945 (-) 609 WP_060532179.1 tRNA-uridine aminocarboxypropyltransferase -
  FORC9_RS09920 (FORC9_1940) rrtA 2177925..2178509 (+) 585 WP_060532181.1 rhombosortase -
  FORC9_RS09925 (FORC9_1941) comEA 2178556..2178858 (-) 303 WP_013572179.1 ComEA family DNA-binding protein Machinery gene
  FORC9_RS09930 (FORC9_1942) ppiD 2178991..2180850 (-) 1860 WP_013572180.1 peptidylprolyl isomerase -
  FORC9_RS09935 (FORC9_1943) - 2181027..2181299 (-) 273 WP_013572181.1 HU family DNA-binding protein -
  FORC9_RS09940 (FORC9_1944) lon 2181493..2183844 (-) 2352 WP_011078147.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10900.72 Da        Isoelectric Point: 9.6573

>NTDB_id=133474 FORC9_RS09925 WP_013572179.1 2178556..2178858(-) (comEA) [Vibrio vulnificus strain FORC_009]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=133474 FORC9_RS09925 WP_013572179.1 2178556..2178858(-) (comEA) [Vibrio vulnificus strain FORC_009]
ATGAAACAGGTATTTACCCTCTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36

Multiple sequence alignment