Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RPPX_RS10295 Genome accession   NZ_CP009974
Coordinates   2299096..2300586 (-) Length   496 a.a.
NCBI ID   WP_026031856.1    Uniprot ID   A0AA34WU08
Organism   Pseudomonas putida S12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2294096..2305586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPPX_RS10285 (RPPX_10285) - 2297670..2298662 (+) 993 WP_014592822.1 response regulator -
  RPPX_RS10290 (RPPX_10290) - 2298659..2299027 (+) 369 WP_031307593.1 response regulator transcription factor -
  RPPX_RS10295 (RPPX_10295) comM 2299096..2300586 (-) 1491 WP_026031856.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RPPX_RS10300 (RPPX_10300) - 2300849..2302918 (+) 2070 WP_019437350.1 DUF4034 domain-containing protein -
  RPPX_RS10305 (RPPX_10305) - 2302872..2303225 (-) 354 WP_019437349.1 gamma-glutamylcyclotransferase family protein -
  RPPX_RS10310 (RPPX_10310) - 2303226..2303492 (-) 267 WP_026031854.1 accessory factor UbiK family protein -
  RPPX_RS10315 (RPPX_10315) glnK 2304028..2304366 (+) 339 WP_002555808.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53019.94 Da        Isoelectric Point: 7.7100

>NTDB_id=133284 RPPX_RS10295 WP_026031856.1 2299096..2300586(-) (comM) [Pseudomonas putida S12]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLTDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ESSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLLAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=133284 RPPX_RS10295 WP_026031856.1 2299096..2300586(-) (comM) [Pseudomonas putida S12]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCACAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGACCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAGGTGCAGGGCCAACTGGCAGCCAAACGAGCCTTGCTGCTGGCTGCTGCCGGGGCGCACAACC
TGCTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCACCGCTGAACAGCTGGCCACAGCGACCCTTTCG
CCACCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCAGCAGCCGGCCGCAACCTGGTGAAATCACACTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAGCTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGAGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCAGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAAGCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGCTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGTTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGGGCGGCGCACCGGTTGTTGAAGGTGGCACGGACACTGGCGGACCTGGAGGGATGCGAGACGATT
GGCCGGGCGCACCTGGCCGAGGCCCTGCAGTACCGACCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.758

99.798

0.556
  comM Vibrio campbellii strain DS40M4

55.645

100

0.556
  comM Haemophilus influenzae Rd KW20

55

100

0.554
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.482

Multiple sequence alignment