Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LT85_RS23495 Genome accession   NZ_CP009962
Coordinates   5313819..5315348 (+) Length   509 a.a.
NCBI ID   WP_038493866.1    Uniprot ID   A0A0A1FJJ7
Organism   Collimonas arenae strain Cal35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5308819..5320348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT85_RS23470 (LT85_4737) - 5309259..5310752 (-) 1494 WP_038493856.1 PLP-dependent aminotransferase family protein -
  LT85_RS23475 (LT85_4738) - 5310755..5311828 (-) 1074 WP_038493859.1 alpha/beta fold hydrolase -
  LT85_RS23480 (LT85_4739) - 5312028..5312498 (+) 471 WP_253273614.1 GNAT family N-acetyltransferase -
  LT85_RS23485 (LT85_4740) - 5312557..5313264 (+) 708 WP_038493861.1 GNAT family N-acetyltransferase -
  LT85_RS23490 (LT85_4741) - 5313566..5313808 (+) 243 WP_038493864.1 accessory factor UbiK family protein -
  LT85_RS23495 (LT85_4742) comM 5313819..5315348 (+) 1530 WP_038493866.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LT85_RS23500 (LT85_4743) - 5315496..5315909 (+) 414 WP_052135421.1 hypothetical protein -
  LT85_RS23505 (LT85_4744) - 5316208..5316465 (+) 258 WP_014008142.1 DUF3567 domain-containing protein -
  LT85_RS23510 (LT85_4745) - 5316691..5317380 (+) 690 WP_038493870.1 tRNA (guanosine(46)-N(7))-methyltransferase TrmB -
  LT85_RS23515 (LT85_4746) - 5317432..5319333 (-) 1902 WP_038493873.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54620.64 Da        Isoelectric Point: 8.9906

>NTDB_id=133204 LT85_RS23495 WP_038493866.1 5313819..5315348(+) (comM) [Collimonas arenae strain Cal35]
MTLAVLKSRALAGMQAPEVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALQNARFEFPSRRITVNLAPADLPKESGR
FDLPIALGILAASGQMPANKLDDYEFAGELSLSGELRPIRGALAMTFAMTAQSSNAPNGKSRAFILPRANADEAALVTDA
RILPADSLLQVCAHFSSAQAETRLSRHIAEPQPRLPGYMDFSDVKGQLQAKRALEVAAAGGHSVLLMGPPGTGKSMLATR
FPGILPPMSDRDALESAAVQSLTSGFSSAAWKVRPYRSPHHTATAVALVGGGSPPRPGEISLAHRGVLFLDELPQFDKRV
LEVLREPLESGRITISRAARQADFPAQFQLIAAMNPCPCGYLGHTVKQCRCTPDNILRYQNKISGPLLDRIDMQILVPAL
PHDELLNAAQGESSAAIATRIEQVCALQLARQGKQNNALSASEIDQLCKPDNAGEKLLRGAMTRLNWSARGYHRALKVAR
TIADLSGAENIAASHVAEAIQYRRALSQA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=133204 LT85_RS23495 WP_038493866.1 5313819..5315348(+) (comM) [Collimonas arenae strain Cal35]
GTGACGCTGGCAGTATTGAAAAGCCGGGCGCTGGCAGGCATGCAGGCGCCCGAGGTGACAGTTGAAGTCCACCTGGCCAA
CGGCCTGCCTAGTTTTACCATCGTCGGGCTACCCGAAACCGAGGTCAAGGAATCCAAGGACCGGGTCCGCGCAGCGCTGC
AAAACGCCCGTTTCGAATTTCCTTCCCGTCGTATCACCGTCAATCTCGCGCCTGCAGATCTACCCAAAGAATCAGGACGA
TTTGACTTGCCGATTGCGCTCGGCATCCTGGCTGCATCCGGACAGATGCCTGCGAACAAACTCGATGACTACGAATTTGC
CGGCGAACTCTCGTTGTCCGGCGAGTTAAGGCCGATACGCGGCGCGCTGGCGATGACCTTCGCCATGACTGCCCAAAGCA
GCAATGCGCCAAACGGCAAAAGCCGTGCCTTCATCCTGCCACGCGCCAATGCCGACGAAGCGGCGCTGGTCACCGATGCC
CGTATCCTGCCGGCCGACAGCCTGTTGCAAGTGTGCGCCCACTTCTCATCTGCGCAGGCAGAAACAAGATTATCGCGCCA
TATTGCCGAACCACAGCCAAGACTACCTGGCTACATGGATTTCAGCGACGTCAAGGGTCAGCTGCAAGCCAAGCGCGCGC
TGGAAGTAGCCGCGGCCGGTGGCCATAGCGTCTTGCTGATGGGACCGCCAGGCACTGGAAAATCGATGCTGGCGACGCGT
TTTCCTGGAATTCTGCCGCCGATGAGCGACCGTGATGCCCTGGAATCGGCTGCGGTGCAATCGCTGACCAGCGGCTTTTC
CAGCGCGGCATGGAAGGTACGGCCATATCGTTCGCCACATCACACAGCGACCGCCGTTGCACTGGTCGGAGGAGGCAGTC
CGCCCCGCCCCGGCGAAATTTCACTGGCGCATCGTGGCGTGTTGTTTTTGGATGAGTTGCCGCAATTCGACAAGCGTGTG
CTGGAGGTACTACGTGAGCCGCTGGAATCCGGCCGCATCACGATTTCGCGGGCCGCGCGGCAAGCAGATTTTCCGGCACA
ATTTCAGTTGATCGCGGCAATGAACCCCTGTCCTTGCGGCTACCTCGGACATACCGTCAAACAATGCCGCTGCACGCCCG
ACAATATCCTGCGTTATCAAAACAAGATCTCGGGGCCATTGCTCGACCGCATCGATATGCAGATTCTAGTGCCGGCGTTG
CCTCATGATGAACTGCTGAATGCCGCTCAAGGGGAATCGTCGGCAGCCATCGCAACGCGCATCGAACAAGTGTGTGCCTT
GCAACTGGCGCGTCAAGGCAAGCAGAATAATGCCTTATCGGCGAGTGAAATCGATCAGCTTTGCAAGCCTGATAACGCTG
GAGAAAAACTGTTGCGAGGGGCCATGACCCGCCTGAACTGGTCGGCGCGCGGCTATCATCGCGCGCTTAAAGTTGCACGC
ACGATTGCCGATTTGAGCGGAGCGGAAAACATTGCCGCGAGTCATGTCGCCGAAGCGATTCAATATCGCCGGGCTTTAAG
CCAAGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1FJJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.348

99.411

0.54
  comM Vibrio campbellii strain DS40M4

53.267

99.214

0.528
  comM Haemophilus influenzae Rd KW20

51.181

99.804

0.511
  comM Glaesserella parasuis strain SC1401

50.884

100

0.509
  comM Legionella pneumophila str. Paris

50.784

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.784

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.168

99.607

0.45

Multiple sequence alignment