Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AEI25_RS05765 Genome accession   NZ_CP012242
Coordinates   1088986..1089480 (+) Length   164 a.a.
NCBI ID   WP_260627815.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ055CCUA     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083986..1094480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI25_RS05750 (AEI25_05745) - 1085372..1086550 (-) 1179 WP_002861903.1 metal-dependent hydrolase -
  AEI25_RS05755 (AEI25_05750) gpsA 1086560..1087456 (-) 897 WP_260627813.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AEI25_RS05760 (AEI25_05755) gatB 1087453..1088871 (-) 1419 WP_260627814.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AEI25_RS05765 (AEI25_05760) luxS 1088986..1089480 (+) 495 WP_260627815.1 S-ribosylhomocysteine lyase Regulator
  AEI25_RS05770 (AEI25_05765) - 1089791..1090783 (+) 993 WP_002853499.1 isopenicillin N synthase family dioxygenase -
  AEI25_RS05775 (AEI25_05770) - 1090794..1091564 (+) 771 WP_260627816.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEI25_RS05780 (AEI25_05775) metE 1091576..1093840 (+) 2265 WP_260627817.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18315.28 Da        Isoelectric Point: 6.3290

>NTDB_id=132878 AEI25_RS05765 WP_260627815.1 1088986..1089480(+) (luxS) [Campylobacter jejuni strain CJ055CCUA]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENT

Nucleotide


Download         Length: 495 bp        

>NTDB_id=132878 AEI25_RS05765 WP_260627815.1 1088986..1089480(+) (luxS) [Campylobacter jejuni strain CJ055CCUA]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGCACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGTGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATACTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701

Multiple sequence alignment