Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OM33_RS02190 Genome accession   NZ_CP009888
Coordinates   503877..504551 (-) Length   224 a.a.
NCBI ID   WP_038638172.1    Uniprot ID   -
Organism   Pseudoalteromonas piratica strain OCN003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 498877..509551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM33_RS21935 - 499868..502174 (+) 2307 WP_052140867.1 bifunctional diguanylate cyclase/phosphodiesterase -
  OM33_RS02175 (OM33_02175) - 502171..502659 (-) 489 WP_038638163.1 DUF4442 domain-containing protein -
  OM33_RS02180 (OM33_02180) - 502801..503145 (+) 345 WP_038638166.1 HopJ type III effector protein -
  OM33_RS02185 (OM33_02185) - 503250..503810 (+) 561 WP_038638168.1 hypothetical protein -
  OM33_RS02190 (OM33_02190) ssb 503877..504551 (-) 675 WP_038638172.1 single-stranded DNA-binding protein Machinery gene
  OM33_RS02195 (OM33_02195) - 504568..505956 (-) 1389 WP_038638176.1 MFS transporter -
  OM33_RS02200 (OM33_02200) - 506019..506765 (-) 747 WP_052140868.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24030.25 Da        Isoelectric Point: 4.9264

>NTDB_id=132704 OM33_RS02190 WP_038638172.1 503877..504551(-) (ssb) [Pseudoalteromonas piratica strain OCN003]
MARGINKVILVGNLGQDPEVRYMPNGNAVANITLATSDSYKDKNTGQLVDKTEWHRVVFFGKLAEVVGEYCRKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIVVDGFTGQMQMLGGRGENAGGNAGGGFQQQNQQQSGFAPQQSQGFNQGGQQQQGGFNQQ
PAQQQSAPAQQSGGFAPQQGGQQQSGGFAPQQQSGGFAPKQNAPQGGASNPMEPPIDFDDDIPF

Nucleotide


Download         Length: 675 bp        

>NTDB_id=132704 OM33_RS02190 WP_038638172.1 503877..504551(-) (ssb) [Pseudoalteromonas piratica strain OCN003]
ATGGCTCGTGGTATTAACAAAGTGATCCTAGTTGGTAATTTAGGCCAGGATCCAGAAGTGAGATATATGCCAAACGGTAA
CGCAGTAGCAAATATCACACTTGCAACGTCTGACAGTTATAAAGATAAAAACACGGGTCAGTTAGTCGATAAAACCGAAT
GGCACCGAGTGGTGTTTTTTGGCAAGTTAGCTGAAGTAGTGGGTGAGTATTGTCGTAAAGGCTCGCAAATTTACGTTGAA
GGTAAATTGCAAACACGTAAATGGCAAGATCAGCAAGGTCAAGATAAGTACACAACTGAAATAGTTGTGGATGGCTTTAC
AGGTCAAATGCAAATGCTAGGTGGCCGTGGCGAAAATGCCGGTGGCAATGCAGGCGGTGGTTTCCAACAACAAAACCAGC
AGCAATCAGGTTTTGCTCCTCAGCAATCACAAGGTTTTAACCAAGGTGGTCAACAGCAACAGGGTGGCTTTAACCAGCAA
CCTGCACAGCAGCAGTCAGCGCCGGCGCAACAATCAGGCGGTTTTGCACCACAGCAAGGTGGTCAGCAACAATCTGGTGG
TTTTGCGCCACAGCAACAATCAGGTGGTTTTGCTCCTAAGCAAAATGCACCGCAAGGCGGCGCATCAAACCCAATGGAAC
CACCAATTGATTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.363

99.554

0.531
  ssb Glaesserella parasuis strain SC1401

46.847

99.107

0.464
  ssb Neisseria meningitidis MC58

40.909

98.214

0.402
  ssb Neisseria gonorrhoeae MS11

40.455

98.214

0.397

Multiple sequence alignment