Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XFC3_RS08775 Genome accession   NZ_CP009829
Coordinates   1923098..1924618 (-) Length   506 a.a.
NCBI ID   WP_023906808.1    Uniprot ID   -
Organism   Xylella fastidiosa strain 3124     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1918098..1929618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFC3_RS08765 (XFC3_08820) - 1918390..1919442 (-) 1053 WP_010893694.1 lipase secretion chaperone -
  XFC3_RS08770 (XFC3_08825) - 1919443..1920576 (-) 1134 WP_010893693.1 triacylglycerol lipase -
  XFC3_RS08775 (XFC3_08830) comM 1923098..1924618 (-) 1521 WP_023906808.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XFC3_RS08780 (XFC3_08835) - 1924629..1924889 (-) 261 WP_031336901.1 accessory factor UbiK family protein -
  XFC3_RS08785 (XFC3_08840) rplQ 1925944..1926324 (-) 381 WP_010893689.1 50S ribosomal protein L17 -
  XFC3_RS08790 (XFC3_08845) rpoA 1926454..1927452 (-) 999 WP_004090142.1 DNA-directed RNA polymerase subunit alpha -
  XFC3_RS08795 (XFC3_08850) rpsD 1927507..1928133 (-) 627 WP_010893688.1 30S ribosomal protein S4 -
  XFC3_RS08800 (XFC3_08855) rpsK 1928148..1928540 (-) 393 WP_010893687.1 30S ribosomal protein S11 -
  XFC3_RS08805 (XFC3_08860) rpsM 1928556..1928912 (-) 357 WP_010893686.1 30S ribosomal protein S13 -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54480.67 Da        Isoelectric Point: 8.2044

>NTDB_id=132461 XFC3_RS08775 WP_023906808.1 1923098..1924618(-) (comM) [Xylella fastidiosa strain 3124]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASKAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRFEVKADVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGGQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGVDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDARTLQYNRQAGLNAHLGQAATERHCCLDVIDQQLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=132461 XFC3_RS08775 WP_023906808.1 1923098..1924618(-) (comM) [Xylella fastidiosa strain 3124]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCTCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGTCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGTGGTCAATTGCCACTCGATGCTTTAGCAGGTAAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCAAAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGAACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCTGGCTGCTCAGAGGTTCGAAGTTAAGGCCGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAGGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGTGGTAAAACTCTTTTAGCCTCAAGATTACCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGGACAGGCACGTCCGGGTGAGATTTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGGAAAACCTTGGAAGCTTTACGTGAACCCATG
GAATCTGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTGGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTGTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCTTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGTCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTCACTGATGCCAGGACTTTGCAATATAATAGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGTGATCGATCAGCAGTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGCGTGGCACGCACGATTGCTGATTTGGATGGC
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTCGACCGTACAGCCTTTGGGATTGCTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54

98.814

0.534
  comM Vibrio cholerae strain A1552

53.8

98.814

0.532
  comM Haemophilus influenzae Rd KW20

52.381

99.605

0.522
  comM Glaesserella parasuis strain SC1401

52.277

99.802

0.522
  comM Legionella pneumophila str. Paris

50.2

98.814

0.496
  comM Legionella pneumophila strain ERS1305867

50.2

98.814

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.495

100

0.443

Multiple sequence alignment