Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OY18_RS06195 Genome accession   NZ_CP009823
Coordinates   1262221..1263741 (-) Length   506 a.a.
NCBI ID   WP_060871957.1    Uniprot ID   -
Organism   Xylella fastidiosa strain J1a12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1257221..1268741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY18_RS06185 (OY18_05790) - 1257513..1258565 (-) 1053 WP_010893694.1 lipase secretion chaperone -
  OY18_RS06190 (OY18_05795) - 1258566..1259699 (-) 1134 WP_010893693.1 triacylglycerol lipase -
  OY18_RS06195 (OY18_05800) comM 1262221..1263741 (-) 1521 WP_060871957.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OY18_RS06200 (OY18_05805) - 1263752..1264012 (-) 261 WP_060871958.1 accessory factor UbiK family protein -
  OY18_RS06205 (OY18_05810) rplQ 1265067..1265447 (-) 381 WP_010893689.1 50S ribosomal protein L17 -
  OY18_RS06210 (OY18_05815) rpoA 1265577..1266575 (-) 999 WP_004090142.1 DNA-directed RNA polymerase subunit alpha -
  OY18_RS06215 (OY18_05820) rpsD 1266630..1267256 (-) 627 WP_010893688.1 30S ribosomal protein S4 -
  OY18_RS06220 (OY18_05825) rpsK 1267258..1267659 (-) 402 WP_088569691.1 30S ribosomal protein S11 -
  OY18_RS06225 (OY18_05830) rpsM 1267675..1268031 (-) 357 WP_010893686.1 30S ribosomal protein S13 -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54466.59 Da        Isoelectric Point: 8.0750

>NTDB_id=132424 OY18_RS06195 WP_060871957.1 1262221..1263741(-) (comM) [Xylella fastidiosa strain J1a12]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAGLLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRFEVKADVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGGQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGVDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDARTLQYNRQAGLNAHLGQAATERHCCLDVIDQQLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=132424 OY18_RS06195 WP_060871957.1 1262221..1263741(-) (comM) [Xylella fastidiosa strain J1a12]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCTCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGTCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGGGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGTGGTCAATTGCCACTCGATGCTTTAGCAGGTAAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGAACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCTGGCTGCTCAGAGGTTCGAAGTTAAGGCCGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAGGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGTGGTAAAACTCTTTTAGCCTCAAGATTACCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGGACAGGCACGTCCGGGTGAGATTTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGGAAAACCTTGGAAGCTTTACGTGAACCCATG
GAATCTGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTGGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTGTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCTTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGTCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTCACTGATGCCAGGACTTTGCAATATAATAGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGTGATCGATCAGCAGTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGCGTGGCACGCACGATTGCTGATTTGGATGGC
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTCGACCGTACAGCCTTTGGCATTGCTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.8

98.814

0.532
  comM Vibrio campbellii strain DS40M4

53.6

98.814

0.53
  comM Haemophilus influenzae Rd KW20

51.984

99.605

0.518
  comM Glaesserella parasuis strain SC1401

51.881

99.802

0.518
  comM Legionella pneumophila str. Paris

49.8

98.814

0.492
  comM Legionella pneumophila strain ERS1305867

49.8

98.814

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.301

100

0.441

Multiple sequence alignment