Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NC16_RS20900 Genome accession   NZ_CP009769
Coordinates   4586327..4587853 (+) Length   508 a.a.
NCBI ID   WP_075278471.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain BC1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4581327..4592853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC16_RS20880 (NC16_20115) - 4582783..4583709 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  NC16_RS20885 (NC16_20120) ilvM 4583735..4583995 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  NC16_RS20890 (NC16_20125) ilvG 4584034..4585680 (-) 1647 WP_039555967.1 acetolactate synthase 2 catalytic subunit -
  NC16_RS20895 ilvL 4585821..4585919 (-) 99 WP_071531109.1 ilv operon leader peptide -
  NC16_RS20900 (NC16_20130) comM 4586327..4587853 (+) 1527 WP_075278471.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NC16_RS20905 (NC16_20135) - 4587911..4588249 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  NC16_RS20910 (NC16_20140) hdfR 4588370..4589197 (+) 828 WP_010283922.1 HTH-type transcriptional regulator HdfR -
  NC16_RS20915 (NC16_20145) yjfF 4589219..4590181 (-) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  NC16_RS20920 (NC16_20150) ytfT 4590181..4591191 (-) 1011 WP_075278472.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  NC16_RS20925 (NC16_20155) ytfR 4591178..4592698 (-) 1521 WP_075278574.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55498.18 Da        Isoelectric Point: 6.6907

>NTDB_id=132067 NC16_RS20900 WP_075278471.1 4586327..4587853(+) (comM) [Pectobacterium brasiliense strain BC1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPLEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=132067 NC16_RS20900 WP_075278471.1 4586327..4587853(+) (comM) [Pectobacterium brasiliense strain BC1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCAGCCTTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCACGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTACCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATCAAATCAGGCC
GCCAGCTTATCCTTCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGCTCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTAGAAATCGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGGCCTCCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAATCTGGGGAAATTATCATTTCCCGCACTAGGGCTAAAGTGTGCTATCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGTGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGTTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTTGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACATCTTGCCGAAGCTCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.065

100

0.632
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.902

98.228

0.5
  comM Legionella pneumophila strain ERS1305867

50.902

98.228

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469

Multiple sequence alignment