Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   EP23_RS17710 Genome accession   NZ_CP009623
Coordinates   1107835..1108878 (-) Length   347 a.a.
NCBI ID   WP_037566929.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 908     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1102835..1113878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP23_RS17680 (EP23_05565) - 1104075..1104284 (-) 210 WP_060551425.1 DUF1128 domain-containing protein -
  EP23_RS17685 (EP23_05570) - 1104417..1104875 (+) 459 WP_060551426.1 low molecular weight protein-tyrosine-phosphatase -
  EP23_RS17690 (EP23_05575) - 1104883..1105158 (+) 276 WP_037566921.1 hypothetical protein -
  EP23_RS17695 (EP23_05580) - 1105274..1106545 (+) 1272 WP_060551427.1 YihY/virulence factor BrkB family protein -
  EP23_RS17700 (EP23_05585) - 1106581..1107150 (+) 570 WP_060551428.1 beta-class carbonic anhydrase -
  EP23_RS17705 (EP23_05590) vraR 1107216..1107845 (-) 630 WP_037566926.1 response regulator transcription factor Regulator
  EP23_RS17710 (EP23_05595) vraS 1107835..1108878 (-) 1044 WP_037566929.1 sensor histidine kinase Regulator
  EP23_RS17715 (EP23_05600) liaF 1108875..1109576 (-) 702 WP_060551429.1 cell wall-active antibiotics response protein LiaF -
  EP23_RS17720 (EP23_05605) - 1109589..1109975 (-) 387 WP_086375153.1 hypothetical protein -
  EP23_RS17725 (EP23_05610) map 1110074..1110832 (-) 759 WP_060551430.1 type I methionyl aminopeptidase -
  EP23_RS17730 (EP23_05615) - 1111061..1111378 (+) 318 WP_246864159.1 YkvA family protein -
  EP23_RS17735 (EP23_05620) - 1111498..1112529 (+) 1032 WP_060551432.1 FUSC family protein -
  EP23_RS17740 (EP23_05625) - 1112619..1113350 (-) 732 WP_060551433.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39917.91 Da        Isoelectric Point: 4.8594

>NTDB_id=130834 EP23_RS17710 WP_037566929.1 1107835..1108878(-) (vraS) [Staphylococcus agnetis strain 908]
MNQYVRSIGSMLILVYSLFTAFFFIDNVFTNIIFFQGMFYTQIFGIPVFLFLNLITIFLCIIVGSVLAYKNNQQNDWLKV
QIERAIEGETVGVNDQQIEIYQETLELYEALVPLNQELHRMRIKTQNLTNESYNINDSKVQKIIEDERHRLARELHDSVS
QQLFAASMMLSAIKETPLEPPLNQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIQSLVTDLQRKVPLKVVQDI
GEFDVPKGMEDHLFRITQEAISNTLRHSKGTEVTVELLQREDYILLRIQDDGIGFNVDDKMEQSYGLKNMRERAMEIGAT
FHIVSLPDSGTRIEVKAPLDKEGHNDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=130834 EP23_RS17710 WP_037566929.1 1107835..1108878(-) (vraS) [Staphylococcus agnetis strain 908]
ATGAATCAATACGTACGATCGATAGGTTCAATGCTTATATTAGTGTATAGCTTATTTACAGCTTTCTTCTTTATAGACAA
TGTATTTACGAATATTATTTTCTTTCAAGGTATGTTTTATACACAAATTTTTGGTATACCTGTGTTTCTGTTTTTAAATC
TTATTACCATATTTTTGTGTATTATTGTTGGAAGTGTACTTGCATATAAAAATAATCAACAAAATGATTGGCTTAAAGTT
CAAATTGAACGTGCGATTGAAGGGGAAACCGTTGGTGTAAATGATCAACAAATTGAAATTTACCAAGAAACATTAGAGCT
TTACGAAGCACTCGTGCCACTGAATCAAGAGTTACATCGCATGCGTATTAAAACGCAAAATTTAACGAATGAATCGTATA
ATATCAATGATTCAAAAGTACAAAAAATTATCGAGGATGAACGTCATCGACTTGCTAGAGAACTTCATGACAGTGTGTCA
CAACAATTATTTGCGGCAAGTATGATGCTTTCTGCAATTAAAGAAACGCCTCTAGAACCCCCATTAAATCAACAAATTCC
GACGCTTGAAAAAATGGTGCAAGATTCACAATTAGAAATGCGCGCGCTGTTATTACATTTAAGACCGATAGGCTTGAAAG
ATAAATCATTAGGTGAAGGTATTCAATCTTTAGTGACGGATTTACAACGTAAAGTTCCATTGAAAGTAGTTCAAGATATC
GGTGAGTTTGATGTACCTAAGGGAATGGAAGACCATTTATTTAGAATTACACAAGAAGCGATTTCTAATACACTCCGTCA
TTCAAAAGGGACTGAAGTGACGGTGGAATTGTTACAACGAGAAGATTACATATTGCTACGCATTCAAGATGATGGTATCG
GATTTAATGTTGATGATAAGATGGAACAAAGTTATGGATTGAAAAATATGCGTGAACGTGCAATGGAAATTGGCGCGACA
TTTCATATCGTATCATTACCGGATTCAGGTACTCGAATTGAAGTGAAAGCACCATTAGATAAGGAGGGACATAATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

82.133

100

0.821


Multiple sequence alignment