Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   WX60_RS00050 Genome accession   NZ_CP012027
Coordinates   7528..8496 (+) Length   322 a.a.
NCBI ID   WP_010359920.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA6140     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528..13496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX60_RS00025 (WX60_00004) - 3023..3532 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  WX60_RS00030 (WX60_00005) - 3762..4343 (-) 582 WP_003698180.1 superoxide dismutase -
  WX60_RS00035 (WX60_00006) dnaB 4506..5912 (+) 1407 WP_010359914.1 replicative DNA helicase -
  WX60_RS00040 (WX60_00007) pilH 6220..6882 (+) 663 WP_025455984.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  WX60_RS00045 (WX60_00008) pilV/pilI 6914..7531 (+) 618 WP_010359918.1 type IV pilus modification protein PilV Regulator
  WX60_RS00050 (WX60_00009) pilJ 7528..8496 (+) 969 WP_010359920.1 PilW family protein Machinery gene
  WX60_RS00055 (WX60_00010) pilK 8475..9086 (+) 612 WP_010359922.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WX60_RS00060 (WX60_00011) pilL 9088..9561 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  WX60_RS00065 (WX60_00012) - 9631..9939 (-) 309 WP_010359926.1 AzlD family protein -
  WX60_RS13425 - 9936..10646 (-) 711 Protein_14 AzlC family ABC transporter permease -
  WX60_RS00075 (WX60_00014) dut 10812..11264 (+) 453 WP_010359930.1 dUTP diphosphatase -
  WX60_RS00080 (WX60_00015) dapC 11342..12529 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35304.35 Da        Isoelectric Point: 9.1852

>NTDB_id=130832 WX60_RS00050 WP_010359920.1 7528..8496(+) (pilJ) [Neisseria gonorrhoeae strain FA6140]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKGDIVDSSNQTQSNLVKPGAKQENPLFSLKRSGMDKQLIPVAESADIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVQYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=130832 WX60_RS00050 WP_010359920.1 7528..8496(+) (pilJ) [Neisseria gonorrhoeae strain FA6140]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGTAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCGCAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCAGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

77.846

100

0.786

Multiple sequence alignment