Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   WX60_RS00040 Genome accession   NZ_CP012027
Coordinates   6220..6882 (+) Length   220 a.a.
NCBI ID   WP_025455984.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA6140     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1220..11882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX60_RS00015 (WX60_00002) cysT 1340..2178 (-) 839 Protein_3 sulfate ABC transporter permease subunit CysT -
  WX60_RS00020 (WX60_00003) - 2364..2696 (+) 333 WP_003687908.1 hypothetical protein -
  WX60_RS00025 (WX60_00004) - 3023..3532 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  WX60_RS00030 (WX60_00005) - 3762..4343 (-) 582 WP_003698180.1 superoxide dismutase -
  WX60_RS00035 (WX60_00006) dnaB 4506..5912 (+) 1407 WP_010359914.1 replicative DNA helicase -
  WX60_RS00040 (WX60_00007) pilH 6220..6882 (+) 663 WP_025455984.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  WX60_RS00045 (WX60_00008) pilV/pilI 6914..7531 (+) 618 WP_010359918.1 type IV pilus modification protein PilV Regulator
  WX60_RS00050 (WX60_00009) pilJ 7528..8496 (+) 969 WP_010359920.1 PilW family protein Machinery gene
  WX60_RS00055 (WX60_00010) pilK 8475..9086 (+) 612 WP_010359922.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WX60_RS00060 (WX60_00011) pilL 9088..9561 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  WX60_RS00065 (WX60_00012) - 9631..9939 (-) 309 WP_010359926.1 AzlD family protein -
  WX60_RS13425 - 9936..10646 (-) 711 Protein_14 AzlC family ABC transporter permease -
  WX60_RS00075 (WX60_00014) dut 10812..11264 (+) 453 WP_010359930.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24465.93 Da        Isoelectric Point: 9.4068

>NTDB_id=130830 WX60_RS00040 WP_025455984.1 6220..6882(+) (pilH) [Neisseria gonorrhoeae strain FA6140]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGRGMLAFGDKNGNKAYDGDEADVFLRSVVLNDTDDSRINYAFNHIAFGQIQPTAERVVWTFNQNGTFGYLSD
QNLKDNSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=130830 WX60_RS00040 WP_025455984.1 6220..6882(+) (pilH) [Neisseria gonorrhoeae strain FA6140]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGTGA
TGAGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTCAAATACAGCCGACTGCCGAACGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGTCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGTTTC
TGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.545

100

0.945

Multiple sequence alignment