Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IX92_RS15860 Genome accession   NZ_CP009617
Coordinates   3388623..3390146 (-) Length   507 a.a.
NCBI ID   WP_043009575.1    Uniprot ID   A0AAN0SDX7
Organism   Vibrio coralliilyticus strain RE98     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3383623..3395146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS15840 (IX92_15840) - 3384846..3385832 (+) 987 WP_043009573.1 serine/threonine protein kinase -
  IX92_RS15845 (IX92_15845) - 3385863..3386483 (+) 621 WP_006957502.1 thiol:disulfide interchange protein DsbA/DsbL -
  IX92_RS15850 (IX92_15850) - 3386539..3387423 (-) 885 WP_006957501.1 acyltransferase -
  IX92_RS15855 (IX92_15855) - 3387607..3388590 (+) 984 WP_043009574.1 DUF2860 domain-containing protein -
  IX92_RS15860 (IX92_15860) comM 3388623..3390146 (-) 1524 WP_043009575.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IX92_RS15865 (IX92_15865) ilvG 3390652..3392298 (+) 1647 WP_043009576.1 acetolactate synthase 2 catalytic subunit -
  IX92_RS15870 (IX92_15870) ilvM 3392300..3392584 (+) 285 WP_006957495.1 acetolactate synthase 2 small subunit -
  IX92_RS15875 (IX92_15875) ilvE 3392597..3393541 (+) 945 WP_019273987.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55214.35 Da        Isoelectric Point: 7.5317

>NTDB_id=130795 IX92_RS15860 WP_043009575.1 3388623..3390146(-) (comM) [Vibrio coralliilyticus strain RE98]
MGLAIIYSRASVGVEAPPVMVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPVSGLAEKEFVGELALSGELRGVKGVLPAALASNKAQRSLVVPHYNGDQAALVGEEQHKSAQSL
LEVCADLCGQQKLSLYQTQNLHRAVDNGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINALNWKRRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTEVVKQRVLNARVCMLERSNKVNALLGSREIEEYCPLKKEDAQFLESALHRLGLSIRAYHRIIKVARTIADLDGQSQ
IARHHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=130795 IX92_RS15860 WP_043009575.1 3388623..3390146(-) (comM) [Vibrio coralliilyticus strain RE98]
ATGGGCTTAGCCATTATTTACAGTCGGGCATCGGTGGGGGTTGAAGCGCCTCCTGTGATGGTAGAGGTGCATATCAGTAA
TGGAATGCCGGGGTTCACTCTGGTGGGATTACCGGAAACCACTGTTAAAGAATCACGCGACCGAGTGCGCAGTGCGATCA
TCAACTCTCGATTTGAGTTTCCAGCCAAGCGAATCACGGTCAATCTTGCACCCGCCGATCTGCCCAAGGAGGGAGGGCGC
TTTGATCTGCCGATTGCACTAGGCATTCTCGCCGCTTCAGAGCAGATCCCAGTCAGCGGCTTGGCAGAAAAAGAGTTCGT
TGGTGAACTGGCTTTGTCGGGTGAGCTGCGCGGAGTGAAAGGGGTATTGCCTGCAGCGCTGGCATCCAACAAAGCACAGC
GAAGCTTGGTTGTACCTCATTACAACGGCGATCAAGCCGCGTTAGTGGGCGAAGAACAGCATAAATCTGCCCAAAGCTTA
TTAGAAGTGTGCGCCGATCTTTGCGGCCAACAAAAGCTTAGCCTGTATCAAACACAAAATCTGCACCGAGCGGTGGATAA
TGGCCGCGACTTACAAGACATCATTGGCCAGCAGCAAGGTAAACGTGCTTTGGAGATTGCCGCAGCAGGTAACCACAACT
TGTTATTTTTAGGCCCGCCTGGGACGGGGAAAACCATGCTTGCCTCGCGTTTGTGCGATTTGCTGCCGGAAATGAGTGAC
GACGAAGCAATGGAAACTGCATCTGTTGCGTCGCTGACTCAGCAGGAGATTAATGCGCTCAACTGGAAGCGGCGCCCCTT
TCGTGCTCCGCACCATTCAAGCTCAATGGCAGCGCTCGTCGGCGGAGGCACGATCCCAAGACCGGGTGAAATTTCGTTGG
CCCACAATGGGTTGTTGTTTCTTGATGAAATGCCAGAATTTGAACGCAAAGTACTTGATTCGCTGCGAGAGCCACTGGAA
TCCGGGGAGATTATTATCTCGCGTGCTCAGGGTAAAACTCGCTTCCCTGCACGCTTTCAGCTGGTGGGCGCCCTTAACCC
GAGTCCGACGGGGTATTACGAAGGTAATCAGTCGAGAGTGAATCCACAAACCATTTTACGTTATCTGAGTCGGCTATCTG
GCCCTTTACTGGATCGCTTTGATATGTCACTTGAGATCCCTGCTTTACCTAAAGGTACATTGGCCGAAGGTGGCGATCGT
GGTGAACCTACAGAAGTAGTTAAGCAAAGGGTTCTCAATGCCAGAGTCTGTATGCTGGAGCGCTCCAATAAGGTTAATGC
ACTGTTGGGCAGTCGCGAAATAGAGGAGTACTGTCCATTGAAAAAAGAAGATGCGCAGTTTTTGGAGAGTGCGCTGCACC
GACTTGGGTTGTCAATTCGGGCTTATCATCGAATCATCAAGGTCGCGCGCACTATTGCTGATTTAGATGGTCAGTCGCAG
ATTGCTCGCCATCACCTGGCTGAAGCGTTGGGGTATCGGGCAATGGACCGATTGCTTAAGCAATTGACCGCTCAGGCGGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.785

100

0.868
  comM Vibrio campbellii strain DS40M4

86.588

100

0.866
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.133

100

0.649
  comM Legionella pneumophila str. Paris

50.201

98.225

0.493
  comM Legionella pneumophila strain ERS1305867

50.201

98.225

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.43

Multiple sequence alignment