Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IX92_RS13540 | Genome accession | NZ_CP009617 |
| Coordinates | 2931196..2931744 (-) | Length | 182 a.a. |
| NCBI ID | WP_006958299.1 | Uniprot ID | A0A097QHM9 |
| Organism | Vibrio coralliilyticus strain RE98 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2926196..2936744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IX92_RS13520 (IX92_13520) | - | 2926631..2926954 (-) | 324 | WP_038509428.1 | hypothetical protein | - |
| IX92_RS13525 (IX92_13525) | gspM | 2926947..2927597 (-) | 651 | WP_043009343.1 | type II secretion system protein GspM | - |
| IX92_RS13530 (IX92_13530) | - | 2927597..2929036 (-) | 1440 | WP_043009344.1 | MSHA biogenesis protein MshI | - |
| IX92_RS13535 (IX92_13535) | csrD | 2929033..2931048 (-) | 2016 | WP_006958298.1 | RNase E specificity factor CsrD | - |
| IX92_RS13540 (IX92_13540) | ssb | 2931196..2931744 (-) | 549 | WP_006958299.1 | single-stranded DNA-binding protein | Machinery gene |
| IX92_RS13545 (IX92_13545) | qstR | 2932026..2932673 (+) | 648 | WP_043009345.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| IX92_RS13550 (IX92_13550) | galU | 2932791..2933663 (+) | 873 | WP_006958301.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| IX92_RS13555 (IX92_13555) | uvrA | 2933803..2936625 (+) | 2823 | WP_043009346.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20140.20 Da Isoelectric Point: 4.9269
>NTDB_id=130787 IX92_RS13540 WP_006958299.1 2931196..2931744(-) (ssb) [Vibrio coralliilyticus strain RE98]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=130787 IX92_RS13540 WP_006958299.1 2931196..2931744(-) (ssb) [Vibrio coralliilyticus strain RE98]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCGCTGTTTGGCAAGCTGGCTGAAGTTGCAGGTGAGTACTTACGCAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAACCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCGCTGTTTGGCAAGCTGGCTGAAGTTGCAGGTGAGTACTTACGCAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAACCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.978 |
100 |
0.819 |
| ssb | Glaesserella parasuis strain SC1401 |
55.44 |
100 |
0.588 |
| ssb | Neisseria meningitidis MC58 |
44.865 |
100 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
45.604 |
100 |
0.456 |