Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | IX92_RS13545 | Genome accession | NZ_CP009617 |
| Coordinates | 2932026..2932673 (+) | Length | 215 a.a. |
| NCBI ID | WP_043009345.1 | Uniprot ID | A0AAN0SCN0 |
| Organism | Vibrio coralliilyticus strain RE98 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2927026..2937673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IX92_RS13530 (IX92_13530) | - | 2927597..2929036 (-) | 1440 | WP_043009344.1 | MSHA biogenesis protein MshI | - |
| IX92_RS13535 (IX92_13535) | csrD | 2929033..2931048 (-) | 2016 | WP_006958298.1 | RNase E specificity factor CsrD | - |
| IX92_RS13540 (IX92_13540) | ssb | 2931196..2931744 (-) | 549 | WP_006958299.1 | single-stranded DNA-binding protein | Machinery gene |
| IX92_RS13545 (IX92_13545) | qstR | 2932026..2932673 (+) | 648 | WP_043009345.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| IX92_RS13550 (IX92_13550) | galU | 2932791..2933663 (+) | 873 | WP_006958301.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| IX92_RS13555 (IX92_13555) | uvrA | 2933803..2936625 (+) | 2823 | WP_043009346.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25043.02 Da Isoelectric Point: 8.4692
>NTDB_id=130788 IX92_RS13545 WP_043009345.1 2932026..2932673(+) (qstR) [Vibrio coralliilyticus strain RE98]
MTKNIYTRTIYFLCEDSSQNNPFIHQIEKQLGVDIPHIEPNELMLAMQQHKHKILMIDYQNYRKLNNQIRDLPLSNKMFE
TIIFNVEKRLTTEELLCFGNLKGLFYQDDSVEAIAKGCGEIINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTSREI
QILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMLS
MTKNIYTRTIYFLCEDSSQNNPFIHQIEKQLGVDIPHIEPNELMLAMQQHKHKILMIDYQNYRKLNNQIRDLPLSNKMFE
TIIFNVEKRLTTEELLCFGNLKGLFYQDDSVEAIAKGCGEIINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTSREI
QILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMLS
Nucleotide
Download Length: 648 bp
>NTDB_id=130788 IX92_RS13545 WP_043009345.1 2932026..2932673(+) (qstR) [Vibrio coralliilyticus strain RE98]
ATGACTAAAAACATCTATACCAGAACCATCTACTTTCTCTGTGAAGACAGCTCTCAAAACAACCCTTTCATTCATCAAAT
AGAGAAGCAGCTCGGTGTTGATATTCCGCATATTGAACCAAACGAGTTGATGCTTGCCATGCAGCAACACAAACATAAAA
TTCTAATGATAGATTACCAAAACTACAGAAAGCTCAATAATCAGATTCGAGATTTGCCTCTATCGAATAAAATGTTTGAA
ACCATAATCTTTAATGTAGAAAAAAGACTTACTACAGAAGAGCTACTGTGCTTTGGCAATTTGAAAGGATTGTTTTATCA
AGATGACTCCGTTGAAGCCATCGCTAAAGGGTGTGGTGAGATAATCAACAGTCAAAACTGGTTGCCCCGCAAAGTCGCAG
CTCAGCTACTGCATTACTACCGTCATGTTGTGCTTAGCCAGACTGCCCCTGCAACTGTAGATTTAACCTCACGTGAAATT
CAGATTCTACGCTGTTTAAAAACTGGAGCGTCCAATATGCAAATCGCAGAGGATCTGTTTATTAGTGAGTTTACTGTTAA
GTCCCACCTTTATCAGATCTTCAAAAAGCTTTCCGTTAAGAATCGTGTCCAAGCCATTGCTTGGGCTAATCAACATATGC
TGTCTTAA
ATGACTAAAAACATCTATACCAGAACCATCTACTTTCTCTGTGAAGACAGCTCTCAAAACAACCCTTTCATTCATCAAAT
AGAGAAGCAGCTCGGTGTTGATATTCCGCATATTGAACCAAACGAGTTGATGCTTGCCATGCAGCAACACAAACATAAAA
TTCTAATGATAGATTACCAAAACTACAGAAAGCTCAATAATCAGATTCGAGATTTGCCTCTATCGAATAAAATGTTTGAA
ACCATAATCTTTAATGTAGAAAAAAGACTTACTACAGAAGAGCTACTGTGCTTTGGCAATTTGAAAGGATTGTTTTATCA
AGATGACTCCGTTGAAGCCATCGCTAAAGGGTGTGGTGAGATAATCAACAGTCAAAACTGGTTGCCCCGCAAAGTCGCAG
CTCAGCTACTGCATTACTACCGTCATGTTGTGCTTAGCCAGACTGCCCCTGCAACTGTAGATTTAACCTCACGTGAAATT
CAGATTCTACGCTGTTTAAAAACTGGAGCGTCCAATATGCAAATCGCAGAGGATCTGTTTATTAGTGAGTTTACTGTTAA
GTCCCACCTTTATCAGATCTTCAAAAAGCTTTCCGTTAAGAATCGTGTCCAAGCCATTGCTTGGGCTAATCAACATATGC
TGTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
60.28 |
99.535 |
0.6 |
| qstR | Vibrio campbellii strain DS40M4 |
57.604 |
100 |
0.581 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
56.682 |
100 |
0.572 |