Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LV28_RS46005 Genome accession   NZ_CP009553
Coordinates   4908645..4910213 (+) Length   522 a.a.
NCBI ID   WP_031627440.1    Uniprot ID   A0A378YS44
Organism   Pandoraea pnomenusa strain DSM 16536     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4903645..4915213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV28_RS45985 (LV28_16730) amt 4904937..4906472 (-) 1536 WP_023597831.1 ammonium transporter -
  LV28_RS45990 (LV28_16725) - 4906498..4906836 (-) 339 WP_010804740.1 P-II family nitrogen regulator -
  LV28_RS45995 (LV28_16720) - 4906850..4907677 (-) 828 WP_023872951.1 TorF family putative porin -
  LV28_RS46000 (LV28_16715) - 4908086..4908334 (+) 249 WP_024788671.1 accessory factor UbiK family protein -
  LV28_RS46005 (LV28_16710) comM 4908645..4910213 (+) 1569 WP_031627440.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LV28_RS46010 (LV28_16705) - 4910246..4910785 (-) 540 WP_023597835.1 hypothetical protein -
  LV28_RS46015 (LV28_16700) - 4911073..4911750 (+) 678 WP_052408622.1 hypothetical protein -
  LV28_RS46020 (LV28_16695) - 4911814..4912338 (+) 525 WP_023597837.1 TlpA disulfide reductase family protein -
  LV28_RS46025 (LV28_16690) - 4912412..4913764 (-) 1353 WP_023872945.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 55244.01 Da        Isoelectric Point: 7.9027

>NTDB_id=130162 LV28_RS46005 WP_031627440.1 4908645..4910213(+) (comM) [Pandoraea pnomenusa strain DSM 16536]
MTLAIVSSRAITGMAARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRRVRGGLAMAGAIAAEASTRALVLPVDSAQEAALVEDATVFGAR
TLLDVCAHLAEPDVATPLPRATVPGGSMRQDGAALSPCTGERPIPTDPVADAPDLSDIKGQAPAKRALEVAAAGGHHILF
YGPPGTGKSMLATRLAGLLPALSKAHAVESATLASLSAQGFDLRHWGRRPVRTPHHTASAAALVGGGSTPRPGEISLAHR
GVLFLDELPEFQRRVLEVLREPLEQGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRRCRCTADAVARYRNRLSG
PLLDRIDLHVEVPALSAETFAAQADGERSEVVASRVRQAREWQLSRQGQLNCALSGRALEMQCALSRDAEAVLHRAVAQH
HWSARTYHRVLRVARTVADLAQCQAIDAHHVAEAVQYREAPS

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=130162 LV28_RS46005 WP_031627440.1 4908645..4910213(+) (comM) [Pandoraea pnomenusa strain DSM 16536]
ATGACATTGGCCATCGTGAGCAGCCGGGCGATTACGGGCATGGCAGCGCGCCCGGTGACGGTCGAAGTCCATCTTGCGAA
CGGGCTCCCTGGCCTGTCGCTGGTGGGTCTGCCCGACACCGAAGTCAAGGAAAGCCGGGAGCGGGTACGCTCGGCATTGC
AGAACAGCCGGTTCGAATTTCCGGCGCGGCGCATCACGGTCAATCTGGCGCCCGCTGACCTGCCGAAGGCATCCGGTTGT
TTCGACCTGCCGATTGCGCTCGGCATTCTCGCGGCCAGTGGCCAGTTGCCCGAGGCGGGACTGCGGACGCACGAGTTCGC
GGGCGAATTGTCGCTCACCGGCGAGCTGCGCCGCGTGCGTGGGGGGCTCGCCATGGCGGGCGCCATCGCCGCCGAGGCGT
CGACGCGCGCGCTGGTGCTTCCCGTGGACAGCGCTCAGGAGGCGGCCCTGGTCGAAGACGCCACCGTCTTCGGCGCACGC
ACGTTGCTCGATGTCTGTGCGCATCTTGCCGAACCCGACGTTGCGACGCCGTTGCCGCGTGCCACCGTGCCGGGTGGGTC
GATGCGGCAGGACGGCGCAGCGTTGTCGCCCTGCACCGGCGAGCGGCCGATCCCCACGGATCCGGTGGCCGATGCGCCCG
ATCTGTCGGACATCAAGGGGCAGGCCCCGGCTAAACGGGCACTGGAAGTGGCGGCCGCGGGCGGACATCACATTCTCTTC
TATGGGCCGCCGGGCACGGGCAAGTCGATGCTGGCGACGCGGCTCGCCGGTCTGCTTCCCGCGTTAAGCAAGGCACATGC
CGTGGAATCCGCCACGCTCGCGAGCCTCAGCGCGCAGGGGTTCGACTTGCGCCACTGGGGACGCCGCCCCGTTCGCACCC
CGCATCACACGGCATCGGCTGCCGCACTCGTGGGCGGCGGCAGCACGCCGCGCCCTGGCGAAATCAGCCTGGCCCATCGC
GGGGTGCTCTTTCTCGACGAATTGCCCGAATTCCAGCGGCGTGTGCTCGAAGTTCTGCGCGAACCACTCGAGCAGGGGCA
TGTGACCATCTCCCGTGCCGGCGGACATGCCACGTTCCCCGCCGCGTTCCAGTTGGTCGCCGCAATGAACCCGTGTCCCT
GCGGCGATCTGGGGCACCCGTCGCGACGCTGTCGCTGCACGGCCGACGCGGTGGCGCGCTACCGCAACCGGCTCTCAGGG
CCGCTGCTCGATCGCATCGACCTGCACGTGGAAGTGCCGGCGCTGAGCGCCGAGACGTTCGCCGCCCAGGCCGACGGCGA
GCGGAGTGAGGTTGTCGCATCGCGCGTCAGGCAGGCGCGGGAGTGGCAGTTGTCGCGTCAGGGGCAATTGAACTGCGCGC
TGTCCGGACGGGCCCTGGAGATGCAATGCGCATTGTCGCGCGACGCCGAAGCGGTCCTGCATCGGGCCGTGGCGCAGCAC
CACTGGTCGGCTCGCACCTATCATCGCGTGCTGCGTGTGGCGCGCACCGTCGCGGATCTTGCGCAATGCCAAGCCATCGA
TGCCCATCACGTCGCCGAAGCTGTGCAATATCGAGAGGCCCCCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(426-518)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378YS44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.445

99.425

0.511
  comM Vibrio campbellii strain DS40M4

50.096

99.425

0.498
  comM Haemophilus influenzae Rd KW20

49.326

99.425

0.49
  comM Glaesserella parasuis strain SC1401

49.038

99.617

0.489
  comM Legionella pneumophila str. Paris

47.025

99.808

0.469
  comM Legionella pneumophila strain ERS1305867

47.025

99.808

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.994

99.808

0.429

Multiple sequence alignment