Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LX00_RS01180 Genome accession   NZ_CP009534
Coordinates   251372..252859 (-) Length   495 a.a.
NCBI ID   WP_000010455.1    Uniprot ID   A0A427R1K7
Organism   Acinetobacter baumannii strain Strain AbH12O-A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 246372..257859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LX00_RS19160 - 247060..247230 (+) 171 WP_002009550.1 hypothetical protein -
  LX00_RS01160 (LX00_01165) - 247287..248099 (+) 813 WP_000975212.1 TorF family putative porin -
  LX00_RS01165 (LX00_01170) - 248142..249020 (-) 879 WP_000772980.1 dihydrodipicolinate synthase family protein -
  LX00_RS01170 (LX00_01175) - 249036..249812 (-) 777 WP_000845034.1 aldolase -
  LX00_RS01175 (LX00_01180) - 249924..251357 (+) 1434 WP_000945959.1 PLP-dependent aminotransferase family protein -
  LX00_RS01180 (LX00_01185) comM 251372..252859 (-) 1488 WP_000010455.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LX00_RS01185 (LX00_01190) - 252925..253152 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  LX00_RS01190 (LX00_01195) glnK 253432..253770 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  LX00_RS01195 (LX00_01200) - 253828..255225 (+) 1398 WP_000738520.1 ammonium transporter -
  LX00_RS01200 (LX00_01205) nrdR 255384..255842 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  LX00_RS01205 (LX00_01210) ribD 255858..256943 (+) 1086 WP_001292504.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54497.38 Da        Isoelectric Point: 7.2753

>NTDB_id=129913 LX00_RS01180 WP_000010455.1 251372..252859(-) (comM) [Acinetobacter baumannii strain Strain AbH12O-A2]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=129913 LX00_RS01180 WP_000010455.1 251372..252859(-) (comM) [Acinetobacter baumannii strain Strain AbH12O-A2]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTCCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAGATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCAGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGATATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACCACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427R1K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment