Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LG36_RS08780 Genome accession   NZ_CP009472
Coordinates   1844569..1845555 (-) Length   328 a.a.
NCBI ID   WP_038601732.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1839569..1850555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS08765 (LG36_1679) - 1840932..1841858 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LG36_RS08770 (LG36_1680) - 1842013..1842696 (-) 684 WP_038601729.1 O-methyltransferase -
  LG36_RS08775 (LG36_1681) pepF 1842699..1844504 (-) 1806 WP_038601730.1 oligoendopeptidase F Regulator
  LG36_RS08780 (LG36_1682) coiA 1844569..1845555 (-) 987 WP_038601732.1 competence protein CoiA Machinery gene
  LG36_RS08785 (LG36_1683) - 1845629..1846714 (-) 1086 WP_080739875.1 YdcF family protein -
  LG36_RS08790 (LG36_1684) - 1846864..1847712 (-) 849 WP_038601734.1 alpha/beta hydrolase -
  LG36_RS08795 (LG36_1685) - 1847905..1849326 (-) 1422 WP_038601737.1 NCS2 family permease -
  LG36_RS08800 (LG36_1686) - 1849633..1850469 (+) 837 WP_038601740.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 39387.91 Da        Isoelectric Point: 8.5152

>NTDB_id=129647 LG36_RS08780 WP_038601732.1 1844569..1845555(-) (coiA) [Lactococcus lactis strain AI06]
MLTAIDENRQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLSACDLWLENESEQHLGLKKELYQWFKKT
DKVEIESYLPELKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKLRLKSLIHEDLRGKIIYLQEEIPFGQGRLIEQLRLPFLSQKLLTVPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLYEFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMN

Nucleotide


Download         Length: 987 bp        

>NTDB_id=129647 LG36_RS08780 WP_038601732.1 1844569..1845555(-) (coiA) [Lactococcus lactis strain AI06]
ATGTTGACAGCAATTGATGAAAATAGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGCCCTTCTTGTAAATCAGAATTATTTATAAAAAATGGTGAAATAAAGATGCCCCACTTTGCTCATAAATCTCTCAGTG
CTTGCGATTTATGGCTTGAAAATGAATCTGAACAACATTTAGGGTTAAAAAAAGAACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAGTCTTATCTTCCTGAACTTAAGCAGAGACCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAACGGACAGAAAATTATCAAGTACACGGTTTTACGGTGCTTT
GGCTTATGGGACAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGCTGAGATTGAAGTCACTGATTCATGAAGATTTGCGTGGGAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGCAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAGTACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTATATGAATTTACTCAAATTAAGCAGAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAACAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.46

99.39

0.75
  coiA Streptococcus pneumoniae Rx1

43.789

98.171

0.43
  coiA Streptococcus pneumoniae D39

43.789

98.171

0.43
  coiA Streptococcus pneumoniae R6

43.789

98.171

0.43
  coiA Streptococcus pneumoniae TIGR4

43.789

98.171

0.43
  coiA Streptococcus mitis NCTC 12261

43.574

97.256

0.424

Multiple sequence alignment