Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LG36_RS08775 Genome accession   NZ_CP009472
Coordinates   1842699..1844504 (-) Length   601 a.a.
NCBI ID   WP_038601730.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1837699..1849504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS08760 (LG36_1678) alaS 1838047..1840665 (-) 2619 WP_038601726.1 alanine--tRNA ligase -
  LG36_RS08765 (LG36_1679) - 1840932..1841858 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LG36_RS08770 (LG36_1680) - 1842013..1842696 (-) 684 WP_038601729.1 O-methyltransferase -
  LG36_RS08775 (LG36_1681) pepF 1842699..1844504 (-) 1806 WP_038601730.1 oligoendopeptidase F Regulator
  LG36_RS08780 (LG36_1682) coiA 1844569..1845555 (-) 987 WP_038601732.1 competence protein CoiA Machinery gene
  LG36_RS08785 (LG36_1683) - 1845629..1846714 (-) 1086 WP_080739875.1 YdcF family protein -
  LG36_RS08790 (LG36_1684) - 1846864..1847712 (-) 849 WP_038601734.1 alpha/beta hydrolase -
  LG36_RS08795 (LG36_1685) - 1847905..1849326 (-) 1422 WP_038601737.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70089.85 Da        Isoelectric Point: 4.8599

>NTDB_id=129646 LG36_RS08775 WP_038601730.1 1842699..1844504(-) (pepF) [Lactococcus lactis strain AI06]
MAKNRNEIPEKLTWDLTTIYKTDKEWEAELTRIKSELSLAEETDPGHLLDSAESLLTITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELQKLKNYDHMFERLFAKKTHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMVQLTHGNYSSLMESKNREVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKEKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEERQKYLEYLKAGSSDYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=129646 LG36_RS08775 WP_038601730.1 1842699..1844504(-) (pepF) [Lactococcus lactis strain AI06]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCGAACTTTCACTCGCTGAAGAGACAGACCCTGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACCGAAAAAATGCTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTTTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAATTTTTGAAAATTTCAAAAGAAGTTTATAACAAATGGTTGGGGGAGCTTCAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCTAAAAAAACGCATATTCTTAGTCAAAAAGAAGAAAAGTTATTAGCTGCG
GCTGGTGAAATTTTTGAAAGTCCCTCAGAAACTTTTGAAATTTTTGATAATGCAGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGGTCCAACTCACACATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGGGAAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAAACCTTGCAGACTAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGAAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACATTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AATCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAAGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGTGAAGTTTTAACAAGCGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGAACGTCAAAAATATCTTGAATATTTGAAGGCGGGTTCTTCAGATTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTAGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.393

100

0.644

Multiple sequence alignment