Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LA59_RS00905 Genome accession   NZ_CP009467
Coordinates   183942..185465 (-) Length   507 a.a.
NCBI ID   WP_005451005.1    Uniprot ID   A0A9X3RXA3
Organism   Vibrio harveyi strain ATCC 33843 (392 [MAV])     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178942..190465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA59_RS00880 (LA59_00875) - 179277..180263 (+) 987 WP_005450998.1 serine/threonine protein kinase -
  LA59_RS00885 (LA59_00880) - 180298..180900 (+) 603 WP_005451000.1 thiol:disulfide interchange protein DsbA/DsbL -
  LA59_RS00890 (LA59_00885) - 180957..181835 (-) 879 WP_069686723.1 acyltransferase -
  LA59_RS00895 (LA59_00890) - 182000..182956 (+) 957 WP_017190999.1 DUF2860 domain-containing protein -
  LA59_RS00900 (LA59_00895) - 183106..183939 (+) 834 WP_038897975.1 GGDEF domain-containing protein -
  LA59_RS00905 (LA59_00900) comM 183942..185465 (-) 1524 WP_005451005.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LA59_RS00910 (LA59_00905) ilvG 185929..187575 (+) 1647 WP_009699088.1 acetolactate synthase 2 catalytic subunit -
  LA59_RS00915 (LA59_00910) ilvM 187587..187871 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  LA59_RS00920 (LA59_00915) ilvE 187884..188822 (+) 939 WP_005451015.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54966.94 Da        Isoelectric Point: 9.2602

>NTDB_id=129572 LA59_RS00905 WP_005451005.1 183942..185465(-) (comM) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKETKTHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAAVKERVNQARNDMLNRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=129572 LA59_RS00905 WP_005451005.1 183942..185465(-) (comM) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGGTTTACGCTGGTGGGTCTACCGGAAACCACAGTAAAAGAATCGAAAGATCGTGTCCGAAGTGCGATCG
TTAATTCCAACTTTCAGTTCCCAGCAAAACGAATTACGGTCAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGGCGC
TTTGATCTGCCGATTGCATTAGGGATTTTGGCTGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGAGGGCTGAGACCTGTAAAAGGCGTGCTACCTGCTGCGTTGGCTGCGAACAAAAAACAGC
GTCGTTTAGTGGTGCCTCATGCGAATGGTGATCAAGCGGCATTAGTGGGTAAAGAGCAGCATAAATCAGCCCAATCGTTA
CTGGAAGTGTGTGCTGAGCTTTGTGGTCAGCATCAATTGAATTTATATCAAACCCCGAAGAAAAAAGAGACCAAAACGCA
CGGTCGTGATTTACAAGACATCATTGGTCAACAACAAGGTAAACGCGCTTTAGAAATTGCTGCGGCTGGCAATCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGTAAAACCATGTTGGCATCACGGCTATGTGATTTATTGCCAGAGATGAGCGAT
GAAGAAGCCATGGAAACCGCTTCTGTGGCGTCGCTGACTCAAAGTGAAATCAATGAACACAATTGGAAGACGCGACCGTT
CCGCGCTCCGCACCATTCCAGCTCAATGGCTGCTTTAGTCGGAGGTGGCTCAGTACCAAGACCGGGCGAGATATCTCTAG
CTCATAATGGGTTGTTGTTTTTAGATGAGATGCCGGAGTTTGACCGTAAGGTGCTCGATTCTTTGCGAGAGCCTTTGGAG
TCAGGAGAAATTATTATCTCTAGAGCACAAGGTAAAACGCGCTTTCCTGCTCGATTCCAATTGGTTGGTGCATTAAACCC
CAGTCCGACAGGATATTATGAAGGGAATCAAGCACGGACGAATCCACAAGCTATTTTGCGCTACCTTGGACGTTTATCAG
GTCCGCTTCTAGATCGTTTTGATATGTCGCTGGAAATTCCTGCTCTGCCGAAAGGCACATTATCTGAAGGGGGCGATCGA
GGGGAACCAACAGCGGCGGTCAAGGAACGAGTAAATCAAGCACGCAATGATATGCTCAATCGCAGCGGTAAGGTTAATGC
ACTGTTGGGCAGTCGAGAGATTGAAGCGTTTTGCCCGCTACAAAAAAGCGATGCCGAGTTTCTAGAGAACGCTTTGCACC
GCTTGGGATTGTCGATTCGCGCGTATCACCGCATCATCAAAGTTGCGCGTACTATCGCTGATCTGGAAGGTTCACCACAA
ATTGAACGAACTCACCTTGCTGAAGCATTGGGGTATCGAGCGATGGATAGATTACTCAAACAGTTGACGGCGCAGGCAGT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

98.225

100

0.982
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.444

Multiple sequence alignment