Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AB406_RS06515 | Genome accession | NZ_CP011859 |
| Coordinates | 1348306..1349328 (-) | Length | 340 a.a. |
| NCBI ID | WP_079207463.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer strain HXb2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1343306..1354328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB406_RS06490 (AB406_1300) | - | 1343585..1343995 (+) | 411 | WP_004916514.1 | VanZ family protein | - |
| AB406_RS06495 (AB406_1301) | uvrC | 1343985..1345775 (-) | 1791 | WP_185114011.1 | excinuclease ABC subunit UvrC | Machinery gene |
| AB406_RS06500 (AB406_1302) | - | 1345795..1346784 (-) | 990 | WP_038693536.1 | cation diffusion facilitator family transporter | - |
| AB406_RS06505 (AB406_1303) | coaE | 1346797..1347387 (-) | 591 | WP_079207460.1 | dephospho-CoA kinase | - |
| AB406_RS06510 (AB406_1304) | - | 1347403..1348269 (-) | 867 | WP_079207461.1 | MBL fold metallo-hydrolase | - |
| AB406_RS06515 (AB406_1305) | ruvB | 1348306..1349328 (-) | 1023 | WP_079207463.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AB406_RS06520 (AB406_1306) | - | 1349492..1349998 (-) | 507 | WP_079207465.1 | ferritin | - |
| AB406_RS06525 (AB406_1307) | - | 1350110..1350328 (-) | 219 | WP_079207466.1 | hypothetical protein | - |
| AB406_RS06530 (AB406_1308) | - | 1350464..1351342 (+) | 879 | WP_004918508.1 | IS982-like element ISRa1 family transposase | - |
| AB406_RS06535 (AB406_1309) | - | 1351335..1352021 (-) | 687 | WP_260310969.1 | sulfite exporter TauE/SafE family protein | - |
| AB406_RS06540 (AB406_1310) | - | 1352043..1353179 (-) | 1137 | WP_079207468.1 | efflux RND transporter periplasmic adaptor subunit | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 38029.71 Da Isoelectric Point: 5.1930
>NTDB_id=129520 AB406_RS06515 WP_079207463.1 1348306..1349328(-) (ruvB) [Riemerella anatipestifer strain HXb2]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYKHLNINRAKNMGELF
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYKHLNINRAKNMGELF
Nucleotide
Download Length: 1023 bp
>NTDB_id=129520 AB406_RS06515 WP_079207463.1 1348306..1349328(-) (ruvB) [Riemerella anatipestifer strain HXb2]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCGGGACAAAGGCGTACTTTAGATAATTTAGAAGTCTTTGTAGCGGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACTCTTTTGCATGGTCCTCCAGGGTTAGGGAAAACTACTCTAGCCCACATTATTGCTAATGAATTGGGC
GTGGGTTTTAAAGTAACCTCTGGTCCCGTTTTAGACAAACCTGGAAGTTTGGCAGGACTCCTTACCAATTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTGGAAGAGTACCTCTATTCCGCTATGGAAGATTATA
AGATAGATATTATGCTAGAAACAGGACCTAATGCCCGTTCAGTGCAAATCAATCTTAATCCGTTTACTTTAGTTGGAGCC
ACTACAAGAAGCGGTATGCTTACCAAACCAATGCTAGCAAGATTTGGAATACAATCTAGGTTAGAATACTACACGGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCCGCACTAGAGATAGCTA
GAAGAAGCCGAGGTACTCCTAGAATTGCTAACGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGC
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGTCTTGATGATATGGACAACAA
AATTATGAGGGTGATGATAGAAAACTTCAAAGGGAAACCTGTGGGAATTTCTGCATTAGCCACTTCCATCGGAGAAAATC
CAGAAACTTTGGAAGAAGTCTATGAGCCTTTTTTAATTCAAGAAGGATTTATCATCAGAACGCCAAGAGGAAGAGAAGTT
ACCGATAAGGCTTATAAACACCTTAACATCAATAGAGCTAAAAATATGGGAGAGCTTTTCTAA
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCGGGACAAAGGCGTACTTTAGATAATTTAGAAGTCTTTGTAGCGGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACTCTTTTGCATGGTCCTCCAGGGTTAGGGAAAACTACTCTAGCCCACATTATTGCTAATGAATTGGGC
GTGGGTTTTAAAGTAACCTCTGGTCCCGTTTTAGACAAACCTGGAAGTTTGGCAGGACTCCTTACCAATTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTGGAAGAGTACCTCTATTCCGCTATGGAAGATTATA
AGATAGATATTATGCTAGAAACAGGACCTAATGCCCGTTCAGTGCAAATCAATCTTAATCCGTTTACTTTAGTTGGAGCC
ACTACAAGAAGCGGTATGCTTACCAAACCAATGCTAGCAAGATTTGGAATACAATCTAGGTTAGAATACTACACGGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCCGCACTAGAGATAGCTA
GAAGAAGCCGAGGTACTCCTAGAATTGCTAACGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGC
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGTCTTGATGATATGGACAACAA
AATTATGAGGGTGATGATAGAAAACTTCAAAGGGAAACCTGTGGGAATTTCTGCATTAGCCACTTCCATCGGAGAAAATC
CAGAAACTTTGGAAGAAGTCTATGAGCCTTTTTTAATTCAAGAAGGATTTATCATCAGAACGCCAAGAGGAAGAGAAGTT
ACCGATAAGGCTTATAAACACCTTAACATCAATAGAGCTAAAAATATGGGAGAGCTTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae TIGR4 |
57.143 |
92.647 |
0.529 |
| ruvB | Streptococcus pneumoniae R6 |
57.143 |
92.647 |
0.529 |
| ruvB | Streptococcus pneumoniae D39 |
57.143 |
92.647 |
0.529 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
56.508 |
92.647 |
0.524 |
| ruvB | Synechocystis sp. PCC 6803 |
47.447 |
97.941 |
0.465 |
| ruvB | Helicobacter pylori 26695 |
47.937 |
92.647 |
0.444 |