Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AB406_RS06495 Genome accession   NZ_CP011859
Coordinates   1343985..1345775 (-) Length   596 a.a.
NCBI ID   WP_185114011.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain HXb2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1338985..1350775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB406_RS06480 (AB406_1298) - 1340852..1341850 (-) 999 WP_079207458.1 aminoglycoside phosphotransferase family protein -
  AB406_RS06485 (AB406_1299) lnt 1341884..1343527 (-) 1644 WP_004916512.1 apolipoprotein N-acyltransferase -
  AB406_RS06490 (AB406_1300) - 1343585..1343995 (+) 411 WP_004916514.1 VanZ family protein -
  AB406_RS06495 (AB406_1301) uvrC 1343985..1345775 (-) 1791 WP_185114011.1 excinuclease ABC subunit UvrC Machinery gene
  AB406_RS06500 (AB406_1302) - 1345795..1346784 (-) 990 WP_038693536.1 cation diffusion facilitator family transporter -
  AB406_RS06505 (AB406_1303) coaE 1346797..1347387 (-) 591 WP_079207460.1 dephospho-CoA kinase -
  AB406_RS06510 (AB406_1304) - 1347403..1348269 (-) 867 WP_079207461.1 MBL fold metallo-hydrolase -
  AB406_RS06515 (AB406_1305) ruvB 1348306..1349328 (-) 1023 WP_079207463.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AB406_RS06520 (AB406_1306) - 1349492..1349998 (-) 507 WP_079207465.1 ferritin -
  AB406_RS06525 (AB406_1307) - 1350110..1350328 (-) 219 WP_079207466.1 hypothetical protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69176.91 Da        Isoelectric Point: 9.0390

>NTDB_id=129519 AB406_RS06495 WP_185114011.1 1343985..1345775(-) (uvrC) [Riemerella anatipestifer strain HXb2]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLKNRVLSYFNKSQVGYKTKIMVKKIHRLEVTIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDDVDVFGMVSDETTAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGESLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=129519 AB406_RS06495 WP_185114011.1 1343985..1345775(-) (uvrC) [Riemerella anatipestifer strain HXb2]
GTGAATGAGACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAACCTGGCGTTTACCGTTATTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCTAAAAACCTTAAAAATAGGGTGCTATCTTACTTCAATAAAAGTCAAGTAGGTTATAAGA
CCAAAATTATGGTAAAAAAAATCCATCGTCTAGAGGTTACCATAGTTCCTAGTGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATCAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGCTGTGCATCAAAAA
TGAACCTTTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATCAGGACTTGTACACTTAATCTTTCTGAAGATAGG
ATAGAGAAAGCCAATTATAAAGTCTGTTTAGAATACCACATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTGGAAAGTGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAATTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGATGTAGATGTATTTGGTATGGTGAGTGATGAAACGACGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAAGAAATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAATTTCAGTCTGAATCTAAGGAAATATTACTACCA
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCAAAGGTGGGCGACAAAAAGAGAATTGTAGAACTTTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCTGACCGCCATACCAACCGCA
TTATGGCAGAAATGAAAACACTTCTTAGGCTTCCAGAAGAGCCAAGACACATTGAAGGCTTTGATAATTCTAATATTCAG
GGGACTAACCCTGTATCTGCCTGTGTCGTCTTTAAAGACGGTAAACCAAGCAAGAAGGATTATCGTATTTTCCATATCAA
GACCGTAGAAGGTCCTAACGACTTTGCTTCTATGGAAGAAGTGATTTACCGAAGATATAAAAGATATTTAGATGAAGGCG
AGTCTCTACCTCAACTGATTTTGATAGACGGCGGTAAGGGGCAGCTAAGCTCTGCCGTTAAAAGTTTAAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCCAAAAGGTTGGAAGAGCTATTTTTCCCTAACGACCCTATTCCTTTATA
TTTAGACAAAACTTCAGAAACACTTAAGGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAGTAAAGCACCACC
GTACTAGAAGAACCAACAGCACCATAAAATCAGAACTAGAAGAAATCCCAGGTGTTGGTGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACTTTAGAGGAAATTTTGGGCAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-530)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae D39

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae TIGR4

37.288

98.993

0.369

Multiple sequence alignment