Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LH86_RS06630 | Genome accession | NZ_CP009459 |
| Coordinates | 1415976..1416506 (+) | Length | 176 a.a. |
| NCBI ID | WP_008455813.1 | Uniprot ID | - |
| Organism | Cedecea neteri strain ND14a | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1410976..1421506
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH86_RS06615 (LH86_06685) | aphA | 1411713..1412426 (+) | 714 | WP_039299497.1 | acid phosphatase AphA | - |
| LH86_RS06620 (LH86_06690) | - | 1412565..1412918 (+) | 354 | WP_008455815.1 | MmcQ/YjbR family DNA-binding protein | - |
| LH86_RS06625 (LH86_06695) | uvrA | 1412919..1415744 (-) | 2826 | WP_039299500.1 | excinuclease ABC subunit UvrA | - |
| LH86_RS06630 (LH86_06700) | ssb | 1415976..1416506 (+) | 531 | WP_008455813.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| LH86_RS06635 (LH86_06705) | - | 1416626..1417243 (+) | 618 | WP_039299503.1 | hypothetical protein | - |
| LH86_RS06640 (LH86_06710) | - | 1417190..1418431 (-) | 1242 | WP_039299507.1 | MFS transporter | - |
| LH86_RS06645 (LH86_06715) | - | 1418509..1419420 (-) | 912 | WP_039299510.1 | LysR family transcriptional regulator | - |
| LH86_RS06650 (LH86_06720) | - | 1419565..1420500 (+) | 936 | WP_039299513.1 | aromatic alcohol reductase | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18745.74 Da Isoelectric Point: 5.2456
>NTDB_id=129471 LH86_RS06630 WP_008455813.1 1415976..1416506(+) (ssb) [Cedecea neteri strain ND14a]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=129471 LH86_RS06630 WP_008455813.1 1415976..1416506(+) (ssb) [Cedecea neteri strain ND14a]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
GGGCGCTGTCGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTGGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCATTGCAAACCCGTAAATGGACCGACCAGGCTGGCGTAGAAAAATACACTACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCTGGCGGCAACGGCGGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGAGCGCGCCA
GCGCCATCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
GGGCGCTGTCGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTGGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCATTGCAAACCCGTAAATGGACCGACCAGGCTGGCGTAGAAAAATACACTACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCTGGCGGCAACGGCGGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGAGCGCGCCA
GCGCCATCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75 |
100 |
0.767 |
| ssb | Glaesserella parasuis strain SC1401 |
57.297 |
100 |
0.602 |
| ssb | Neisseria meningitidis MC58 |
47.753 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
47.753 |
100 |
0.483 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
38.333 |
100 |
0.392 |