Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LH23_RS06670 | Genome accession | NZ_CP009458 |
| Coordinates | 1431741..1432271 (+) | Length | 176 a.a. |
| NCBI ID | WP_008455813.1 | Uniprot ID | - |
| Organism | Cedecea neteri strain M006 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1426741..1437271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH23_RS06655 (LH23_06740) | aphA | 1427476..1428189 (+) | 714 | WP_039289349.1 | acid phosphatase AphA | - |
| LH23_RS06660 (LH23_06745) | - | 1428328..1428681 (+) | 354 | WP_039289351.1 | MmcQ/YjbR family DNA-binding protein | - |
| LH23_RS06665 (LH23_06750) | uvrA | 1428682..1431507 (-) | 2826 | WP_039289353.1 | excinuclease ABC subunit UvrA | - |
| LH23_RS06670 (LH23_06755) | ssb | 1431741..1432271 (+) | 531 | WP_008455813.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| LH23_RS06675 (LH23_06760) | - | 1432391..1433023 (+) | 633 | WP_039289355.1 | hypothetical protein | - |
| LH23_RS06680 (LH23_06765) | - | 1433007..1434011 (+) | 1005 | WP_039289358.1 | alpha/beta hydrolase | - |
| LH23_RS06685 (LH23_06770) | - | 1434062..1435534 (-) | 1473 | WP_039289360.1 | pyridoxal phosphate-dependent decarboxylase family protein | - |
| LH23_RS06690 (LH23_06775) | - | 1435549..1436934 (-) | 1386 | WP_008455804.1 | diaminobutyrate--2-oxoglutarate transaminase | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18745.74 Da Isoelectric Point: 5.2456
>NTDB_id=129451 LH23_RS06670 WP_008455813.1 1431741..1432271(+) (ssb) [Cedecea neteri strain M006]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=129451 LH23_RS06670 WP_008455813.1 1431741..1432271(+) (ssb) [Cedecea neteri strain M006]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
GGGCGCTGTCGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTTGTGCTGTTCGGAAAACTGGCCGAAGTTGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGACTGACCAGGCTGGCGTAGAAAAATACACTACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCTGGCGGCAACGGCGGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGAGCGCACCA
GCGCCATCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
GGGCGCTGTCGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTTGTGCTGTTCGGAAAACTGGCCGAAGTTGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGACTGACCAGGCTGGCGTAGAAAAATACACTACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCTGGCGGCAACGGCGGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGAGCGCACCA
GCGCCATCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75 |
100 |
0.767 |
| ssb | Glaesserella parasuis strain SC1401 |
57.297 |
100 |
0.602 |
| ssb | Neisseria meningitidis MC58 |
47.753 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
47.753 |
100 |
0.483 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
38.333 |
100 |
0.392 |