Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JT31_RS10705 | Genome accession | NZ_CP009451 |
| Coordinates | 2316093..2316623 (-) | Length | 176 a.a. |
| NCBI ID | WP_038476657.1 | Uniprot ID | - |
| Organism | Cedecea neteri strain SSMD04 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2311093..2321623
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT31_RS10690 (JT31_10945) | - | 2312397..2313869 (+) | 1473 | WP_038476648.1 | pyridoxal phosphate-dependent decarboxylase family protein | - |
| JT31_RS10695 (JT31_10955) | - | 2314062..2314997 (-) | 936 | WP_038476651.1 | aromatic alcohol reductase | - |
| JT31_RS10700 (JT31_10960) | - | 2315142..2316044 (+) | 903 | WP_038476654.1 | LysR family transcriptional regulator | - |
| JT31_RS10705 (JT31_10965) | ssb | 2316093..2316623 (-) | 531 | WP_038476657.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| JT31_RS10710 (JT31_10970) | uvrA | 2316859..2319690 (+) | 2832 | WP_038476660.1 | excinuclease ABC subunit UvrA | - |
| JT31_RS10715 (JT31_10975) | - | 2319691..2320044 (-) | 354 | WP_038476663.1 | MmcQ/YjbR family DNA-binding protein | - |
| JT31_RS10720 (JT31_10980) | aphA | 2320185..2320898 (-) | 714 | WP_038476667.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18759.77 Da Isoelectric Point: 5.2456
>NTDB_id=129346 JT31_RS10705 WP_038476657.1 2316093..2316623(-) (ssb) [Cedecea neteri strain SSMD04]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGSWGQPQQPQGGNQFSGGAQARPQQQSAP
APSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGSWGQPQQPQGGNQFSGGAQARPQQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=129346 JT31_RS10705 WP_038476657.1 2316093..2316623(-) (ssb) [Cedecea neteri strain SSMD04]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
TGGCGCAGTTGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTAGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGACCGACCAGGCTGGCGTAGAAAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGTGCACCGGCAGGCGGCAACGGCGGCCAGCAGCAGGGCAGCT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGGCTCGTCCGCAGCAGCAGAGCGCGCCA
GCGCCATCTAACGAACCACCAATGGACTTCGACGACGACATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
TGGCGCAGTTGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTAGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGACCGACCAGGCTGGCGTAGAAAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGTGCACCGGCAGGCGGCAACGGCGGCCAGCAGCAGGGCAGCT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGGCTCGTCCGCAGCAGCAGAGCGCGCCA
GCGCCATCTAACGAACCACCAATGGACTTCGACGACGACATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75 |
100 |
0.767 |
| ssb | Glaesserella parasuis strain SC1401 |
55.801 |
100 |
0.574 |
| ssb | Neisseria meningitidis MC58 |
47.191 |
100 |
0.477 |
| ssb | Neisseria gonorrhoeae MS11 |
47.191 |
100 |
0.477 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
37.778 |
100 |
0.386 |