Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LG71_RS04760 Genome accession   NZ_CP009450
Coordinates   1015736..1017256 (-) Length   506 a.a.
NCBI ID   WP_043081545.1    Uniprot ID   -
Organism   Pluralibacter gergoviae strain FB2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1010736..1022256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG71_RS04750 (LG71_04820) hdfR 1014432..1015253 (-) 822 WP_043081543.1 HTH-type transcriptional regulator HdfR -
  LG71_RS04755 (LG71_04825) - 1015372..1015710 (+) 339 WP_043081544.1 DUF413 domain-containing protein -
  LG71_RS04760 (LG71_04830) comM 1015736..1017256 (-) 1521 WP_043081545.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LG71_RS25470 ilvL 1017572..1017670 (+) 99 WP_001311244.1 ilv operon leader peptide -
  LG71_RS04765 (LG71_04835) ilvG 1017810..1019456 (+) 1647 WP_043081547.1 acetolactate synthase 2 catalytic subunit -
  LG71_RS04770 (LG71_04840) ilvM 1019453..1019716 (+) 264 WP_043081548.1 acetolactate synthase 2 small subunit -
  LG71_RS04775 (LG71_04845) - 1019734..1020663 (+) 930 WP_043081549.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54515.96 Da        Isoelectric Point: 8.5925

>NTDB_id=129325 LG71_RS04760 WP_043081545.1 1015736..1017256(-) (comM) [Pluralibacter gergoviae strain FB2]
MSLAIVYTRAALGVNAPPITVEVHISSGLPGLTLVGLPETAVKESRDRVRSAIITSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLKTGNLSQYELIGELALTGALRGVSGAISGAVEAIAAGRRIILPVENGPEAGLLDDARCYVAAHL
QEVCAFLEGKAGLDNPVALLPDVRDDEACLSEVIGQQQGKRALEITAAGGHNVLLIGPPGTGKTMLAARLPGILPPLSNE
EALQSAAIMSLLSASRVQQQWRKRPFRSPHHSASLAAMVGGGSIPLPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKVHISRTRAKITYPARFQLIAAMNPSPTGHYQGQHNRCSPEQTMRYLARLSGPFLDRFDLSLEIPLPPAGLLSQPRTEG
ERSAEVKKRVIAARDRQMARQGRLNALLGSGQISEYCALRNEDAVWLEETLVRLGLSIRAWQRLLKVSRTIADLAGVEQI
TRAHLQEALGYRAVERLLAHLQKMIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=129325 LG71_RS04760 WP_043081545.1 1015736..1017256(-) (comM) [Pluralibacter gergoviae strain FB2]
ATGTCACTGGCAATAGTTTACACGCGCGCCGCGCTCGGCGTGAATGCGCCCCCGATAACCGTTGAGGTTCATATCAGCAG
CGGCCTTCCCGGACTGACGCTGGTCGGCCTGCCGGAAACGGCGGTGAAGGAGTCCCGGGATCGGGTGCGCAGCGCCATCA
TCACCAGCGGGTACGAGTTTCCGGCAAAAAAGATAACTATCAATCTCGCCCCGGCCGACCTGCCGAAAGAGGGAGGGCGA
TACGATCTGCCCATCGCCATCGCGCTTCTGGCGGCTTCTGAGCAGCTTAAGACCGGCAATCTGTCCCAGTACGAGCTGAT
AGGCGAACTGGCGCTTACGGGCGCACTACGCGGCGTCAGCGGTGCGATTTCGGGTGCCGTAGAGGCCATTGCCGCCGGGC
GGCGGATCATCCTGCCGGTGGAGAACGGGCCGGAGGCCGGGCTGCTGGACGATGCCCGCTGCTATGTTGCCGCCCATCTG
CAGGAGGTGTGCGCTTTTCTGGAGGGAAAGGCCGGGCTTGATAACCCCGTAGCGCTGCTGCCGGATGTTCGCGACGACGA
GGCCTGCCTCAGTGAGGTTATCGGGCAGCAGCAGGGGAAGCGCGCGCTGGAGATAACCGCGGCGGGCGGACATAACGTGC
TGCTGATCGGCCCACCGGGCACCGGGAAGACCATGCTTGCCGCCCGCCTGCCCGGGATACTTCCGCCGCTCAGCAACGAA
GAAGCGCTGCAGAGCGCCGCCATCATGAGCCTGCTCAGCGCAAGCCGCGTTCAGCAGCAGTGGCGAAAGCGCCCGTTCCG
CTCTCCTCACCACAGCGCATCGCTGGCCGCCATGGTCGGCGGCGGCTCAATACCCTTGCCCGGCGAGATCTCACTGGCCC
ACAACGGTATTCTGTTCCTCGATGAGCTACCCGAATTCGAGCGCCGCGTGCTTGACGCGCTGCGGGAGCCGATTGAGTCC
GGCAAGGTACATATTTCACGAACCCGGGCAAAGATAACTTACCCGGCGCGGTTTCAGCTGATTGCGGCCATGAACCCCAG
CCCGACGGGACACTATCAGGGACAGCACAATCGCTGTTCGCCGGAACAGACAATGCGCTACCTCGCACGGTTGTCCGGCC
CTTTTCTCGACCGTTTCGATCTCTCGCTGGAGATCCCGCTGCCGCCGGCAGGGCTCCTGAGCCAGCCGCGGACGGAAGGC
GAGCGCAGCGCCGAGGTGAAAAAGCGGGTCATCGCGGCCCGGGACAGGCAGATGGCGCGCCAGGGCAGGCTCAATGCCCT
GCTTGGCAGCGGCCAGATTAGCGAATACTGCGCGCTGCGTAACGAAGACGCCGTCTGGCTTGAAGAGACGCTGGTTCGGC
TGGGATTATCGATCAGGGCGTGGCAGCGGCTGCTGAAGGTATCGCGCACCATTGCCGATCTGGCGGGAGTGGAGCAGATT
ACGCGGGCACATCTTCAGGAGGCCCTGGGCTATCGCGCCGTCGAGCGGCTTCTCGCCCATCTGCAGAAAATGATCGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.486

100

0.595
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Haemophilus influenzae Rd KW20

57.7

100

0.585
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Legionella pneumophila str. Paris

49.499

98.617

0.488
  comM Legionella pneumophila strain ERS1305867

49.499

98.617

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.922

100

0.455

Multiple sequence alignment