Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   M444_RS43075 Genome accession   NZ_CP011664
Coordinates   3581366..3582037 (+) Length   223 a.a.
NCBI ID   WP_235441313.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3576366..3587037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS15225 (M444_15205) - 3578138..3579493 (+) 1356 WP_037797753.1 lanthionine synthetase C family protein -
  M444_RS15230 (M444_15210) - 3579559..3580533 (+) 975 WP_053065772.1 cupin domain-containing protein -
  M444_RS43070 - 3580740..3581213 (+) 474 Protein_3063 ABC transporter transmembrane domain-containing protein -
  M444_RS43075 comA 3581366..3582037 (+) 672 WP_235441313.1 ATP-binding cassette domain-containing protein Regulator
  M444_RS15240 (M444_15220) - 3582136..3582360 (+) 225 WP_037797755.1 hypothetical protein -
  M444_RS15245 (M444_15225) - 3582415..3585459 (-) 3045 WP_047960605.1 BTAD domain-containing putative transcriptional regulator -
  M444_RS15250 (M444_15230) - 3585494..3586204 (-) 711 WP_008740648.1 contact-dependent growth inhibition system immunity protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24155.62 Da        Isoelectric Point: 9.7196

>NTDB_id=129210 M444_RS43075 WP_235441313.1 3581366..3582037(+) (comA) [Streptomyces sp. Mg1]
MSLDVPAGGLTALVGPSGAGKSTVFALLERFYEPASGRILLDGRDVRDWPLTGLRATIGYVEQDAPVLSGTLRDNLLRSA
PRASPEELRAVLALTRLDGLVERLPAGLDTELGHRGTALSGGQRQRVAIARALLRRPRLLLLDEATSQLDAENERALRDA
VADIARETTVVVIAHRLSTVTGARRIVVLEDGRARATGTHRELLASDELYGRLVRTQLLDHRP

Nucleotide


Download         Length: 672 bp        

>NTDB_id=129210 M444_RS43075 WP_235441313.1 3581366..3582037(+) (comA) [Streptomyces sp. Mg1]
CTGTCGCTCGACGTCCCGGCGGGCGGGCTCACCGCGCTCGTCGGCCCCTCCGGCGCCGGCAAGAGCACCGTGTTCGCGCT
GCTGGAGCGGTTCTACGAGCCCGCCTCGGGCCGGATCCTGCTCGACGGCCGCGACGTACGGGACTGGCCGCTGACCGGCC
TGCGCGCCACCATCGGGTACGTGGAGCAGGACGCCCCGGTGCTGTCCGGCACCCTGCGGGACAACCTGCTGCGGTCCGCG
CCCCGGGCCTCGCCCGAGGAGCTGCGGGCGGTCCTCGCGCTGACCCGGCTGGACGGGCTCGTGGAGCGGCTGCCCGCCGG
CCTGGACACCGAACTCGGGCACCGCGGCACGGCCCTGTCGGGCGGTCAGCGCCAGCGCGTGGCCATCGCGCGCGCCCTGC
TGCGCCGGCCCAGGCTGCTGCTGCTCGACGAGGCGACCTCGCAGCTGGACGCCGAGAACGAGCGGGCGCTGCGCGACGCG
GTCGCGGACATCGCCCGGGAGACGACGGTCGTGGTGATCGCGCACCGGCTGTCCACCGTCACCGGCGCCCGCCGGATCGT
GGTCCTGGAGGACGGGCGGGCGCGCGCGACCGGGACGCACCGGGAGCTGCTCGCCTCGGACGAGCTGTACGGGCGGCTGG
TGCGCACCCAGCTGCTGGACCACCGCCCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae D39

41.553

98.206

0.408
  comA Streptococcus pneumoniae Rx1

41.553

98.206

0.408
  comA Streptococcus pneumoniae R6

41.553

98.206

0.408
  comA Streptococcus pneumoniae TIGR4

41.096

98.206

0.404
  comA Streptococcus mitis NCTC 12261

41.096

98.206

0.404
  comA Streptococcus mitis SK321

40.639

98.206

0.399
  comA Streptococcus gordonii str. Challis substr. CH1

40.639

98.206

0.399
  rcrP Streptococcus mutans UA159

38.914

99.103

0.386
  comA/nlmT Streptococcus mutans UA159

39.352

96.861

0.381
  rcrQ Streptococcus mutans UA159

37.615

97.758

0.368

Multiple sequence alignment