Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LC14_RS04145 Genome accession   NZ_CP009421
Coordinates   786388..786861 (+) Length   157 a.a.
NCBI ID   WP_002248019.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3683     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 781388..791861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC14_RS04120 (LC14_04335) dnaB 781843..783249 (+) 1407 WP_002220671.1 replicative DNA helicase -
  LC14_RS04125 (LC14_04340) pilH 783558..784232 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LC14_RS04130 (LC14_04345) pilV 784256..784867 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  LC14_RS04135 (LC14_04350) pilJ 784864..785805 (+) 942 WP_041423115.1 PilW family protein Machinery gene
  LC14_RS04140 (LC14_04355) pilK 785784..786383 (+) 600 WP_002238455.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LC14_RS04145 (LC14_04360) pilX 786388..786861 (+) 474 WP_002248019.1 PilX family type IV pilin Machinery gene
  LC14_RS04155 (LC14_04370) - 788896..789324 (-) 429 Protein_780 AzlC family ABC transporter permease -
  LC14_RS04160 (LC14_04375) dut 789467..789919 (+) 453 WP_002220679.1 dUTP diphosphatase -
  LC14_RS04165 (LC14_04380) dapC 789995..791182 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  LC14_RS15000 - 791270..791395 (+) 126 Protein_783 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17388.15 Da        Isoelectric Point: 9.7122

>NTDB_id=129134 LC14_RS04145 WP_002248019.1 786388..786861(+) (pilX) [Neisseria meningitidis strain NM3683]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQVILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDKEKSRAYSLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=129134 LC14_RS04145 WP_002248019.1 786388..786861(+) (pilX) [Neisseria meningitidis strain NM3683]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGGTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATAAGGAAAAATCAAGGGCATACAGCTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGTGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTATCCGCAGATGCCGGCTGCGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

91.083

100

0.911
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892

Multiple sequence alignment