Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LC14_RS04130 Genome accession   NZ_CP009421
Coordinates   784256..784867 (+) Length   203 a.a.
NCBI ID   WP_002247807.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3683     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 779256..789867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC14_RS04105 (LC14_04320) - 779275..779607 (+) 333 WP_002213854.1 hypothetical protein -
  LC14_RS04110 (LC14_04325) - 779938..780447 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LC14_RS04115 (LC14_04330) - 781093..781680 (-) 588 WP_002220670.1 superoxide dismutase -
  LC14_RS04120 (LC14_04335) dnaB 781843..783249 (+) 1407 WP_002220671.1 replicative DNA helicase -
  LC14_RS04125 (LC14_04340) pilH 783558..784232 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LC14_RS04130 (LC14_04345) pilV 784256..784867 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  LC14_RS04135 (LC14_04350) pilJ 784864..785805 (+) 942 WP_041423115.1 PilW family protein Machinery gene
  LC14_RS04140 (LC14_04355) pilK 785784..786383 (+) 600 WP_002238455.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LC14_RS04145 (LC14_04360) pilX 786388..786861 (+) 474 WP_002248019.1 PilX family type IV pilin Machinery gene
  LC14_RS04155 (LC14_04370) - 788896..789324 (-) 429 Protein_780 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21943.82 Da        Isoelectric Point: 4.5691

>NTDB_id=129131 LC14_RS04130 WP_002247807.1 784256..784867(+) (pilV) [Neisseria meningitidis strain NM3683]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNHTLSAVDGDFAIDAIKTKAQLAEEQLKRFSYELKNALPDAAAIHYAVCKDSLGAAPTLSAGSTFSQNCDGSAN
GDTLIKVLWVNDSAGDSDIARTNLETNGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=129131 LC14_RS04130 WP_002247807.1 784256..784867(+) (pilV) [Neisseria meningitidis strain NM3683]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTATATGGGAAACCATACACTATCAGCTGTGGATGGCGATTTTGCGATTGATGCCATAAAAACTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCATTACGCCG
TCTGCAAGGATTCGTTGGGTGCTGCGCCGACATTGTCCGCCGGCAGTACTTTTTCTCAAAATTGCGATGGTAGTGCAAAT
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGACGAA
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

90.338

100

0.921
  pilI Neisseria gonorrhoeae MS11

80.788

100

0.808
  pilV Neisseria gonorrhoeae MS11

80.788

100

0.808

Multiple sequence alignment