Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LC14_RS04125 Genome accession   NZ_CP009421
Coordinates   783558..784232 (+) Length   224 a.a.
NCBI ID   WP_002247806.1    Uniprot ID   A0AAD2J764
Organism   Neisseria meningitidis strain NM3683     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 778558..789232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC14_RS14995 - 779123..779230 (+) 108 Protein_770 IS5/IS1182 family transposase -
  LC14_RS04105 (LC14_04320) - 779275..779607 (+) 333 WP_002213854.1 hypothetical protein -
  LC14_RS04110 (LC14_04325) - 779938..780447 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LC14_RS04115 (LC14_04330) - 781093..781680 (-) 588 WP_002220670.1 superoxide dismutase -
  LC14_RS04120 (LC14_04335) dnaB 781843..783249 (+) 1407 WP_002220671.1 replicative DNA helicase -
  LC14_RS04125 (LC14_04340) pilH 783558..784232 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LC14_RS04130 (LC14_04345) pilV 784256..784867 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  LC14_RS04135 (LC14_04350) pilJ 784864..785805 (+) 942 WP_041423115.1 PilW family protein Machinery gene
  LC14_RS04140 (LC14_04355) pilK 785784..786383 (+) 600 WP_002238455.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LC14_RS04145 (LC14_04360) pilX 786388..786861 (+) 474 WP_002248019.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25135.80 Da        Isoelectric Point: 10.0449

>NTDB_id=129130 LC14_RS04125 WP_002247806.1 783558..784232(+) (pilH) [Neisseria meningitidis strain NM3683]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDGDAADVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QHLTSKSSFFYSDGYIQIVLTDARAVLDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=129130 LC14_RS04125 WP_002247806.1 783558..784232(+) (pilH) [Neisseria meningitidis strain NM3683]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTT
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTGATC
GGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.767

95.982

0.862

Multiple sequence alignment