Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   LC14_RS04135 Genome accession   NZ_CP009421
Coordinates   784864..785805 (+) Length   313 a.a.
NCBI ID   WP_041423115.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3683     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 779864..790805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC14_RS04110 (LC14_04325) - 779938..780447 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LC14_RS04115 (LC14_04330) - 781093..781680 (-) 588 WP_002220670.1 superoxide dismutase -
  LC14_RS04120 (LC14_04335) dnaB 781843..783249 (+) 1407 WP_002220671.1 replicative DNA helicase -
  LC14_RS04125 (LC14_04340) pilH 783558..784232 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LC14_RS04130 (LC14_04345) pilV 784256..784867 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  LC14_RS04135 (LC14_04350) pilJ 784864..785805 (+) 942 WP_041423115.1 PilW family protein Machinery gene
  LC14_RS04140 (LC14_04355) pilK 785784..786383 (+) 600 WP_002238455.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LC14_RS04145 (LC14_04360) pilX 786388..786861 (+) 474 WP_002248019.1 PilX family type IV pilin Machinery gene
  LC14_RS04155 (LC14_04370) - 788896..789324 (-) 429 Protein_780 AzlC family ABC transporter permease -
  LC14_RS04160 (LC14_04375) dut 789467..789919 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34615.29 Da        Isoelectric Point: 8.0980

>NTDB_id=129132 LC14_RS04135 WP_041423115.1 784864..785805(+) (pilJ) [Neisseria meningitidis strain NM3683]
MRRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSEQQDLRNAATLIVRDARMAGSFG
CFNMSEHPAIDVISDTTQQNSPFSLKRNGIDKLIPIAESSNINYQNFFQFGSALIFQYGIDDVNASTATTVVSSCAAISK
PGKQIPTLEDAKKELKILDQDKEQNGNIARQRHVVNAYAVGKIADEEGLFRFQLDDKGKWGNPQLLVKKVRRMKVRYIYV
FGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=129132 LC14_RS04135 WP_041423115.1 784864..785805(+) (pilJ) [Neisseria meningitidis strain NM3683]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAATTGATGTTATTTCCGATACGACGCAACAAAATTCTCCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGTTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCACCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATCGAAA
CCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCTGGATCAGGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACGTATGAAAGTGCGGTATATCTATGTT
TTCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAATGC
TGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

83.861

100

0.847

Multiple sequence alignment