Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ABA10_RS13550 Genome accession   NZ_CP011534
Coordinates   2632494..2633498 (-) Length   334 a.a.
NCBI ID   WP_003229718.1    Uniprot ID   O32055
Organism   Bacillus subtilis strain UD1022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2627494..2638498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS13520 (ABA10_13520) yrbG 2628468..2629124 (-) 657 WP_015483509.1 DUF421 domain-containing protein -
  ABA10_RS13525 (ABA10_13525) - 2629322..2629711 (+) 390 WP_031315243.1 TIGR04086 family membrane protein -
  ABA10_RS13530 (ABA10_13530) yajC 2629768..2630034 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  ABA10_RS13535 (ABA10_13535) tgt 2630071..2631216 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  ABA10_RS13540 (ABA10_13540) queA 2631243..2632271 (-) 1029 WP_015483511.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ABA10_RS13545 (ABA10_13545) yrzS 2632301..2632501 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  ABA10_RS13550 (ABA10_13550) ruvB 2632494..2633498 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ABA10_RS13555 (ABA10_13555) ruvA 2633509..2634114 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  ABA10_RS13560 (ABA10_13560) bofC 2634253..2634765 (-) 513 WP_047182964.1 sporulation cell-cell signaling protein BofC -
  ABA10_RS13565 (ABA10_13565) csbX 2634813..2636120 (-) 1308 WP_003246197.1 MFS transporter -
  ABA10_RS13570 (ABA10_13570) iolG 2636191..2637216 (-) 1026 WP_047182965.1 inositol 2-dehydrogenase -
  ABA10_RS13575 (ABA10_13575) yrzF 2637454..2638101 (+) 648 WP_047182966.1 phosphotransferase -
  ABA10_RS21745 (ABA10_13580) - 2638147..2638269 (-) 123 WP_003229707.1 hypothetical protein -
  ABA10_RS22055 - 2638354..2638428 (+) 75 Protein_2633 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37467.78 Da        Isoelectric Point: 5.1631

>NTDB_id=128994 ABA10_RS13550 WP_003229718.1 2632494..2633498(-) (ruvB) [Bacillus subtilis strain UD1022]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=128994 ABA10_RS13550 WP_003229718.1 2632494..2633498(-) (ruvB) [Bacillus subtilis strain UD1022]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCCATTGTAGCCAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGGCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTGATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518

Multiple sequence alignment