Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   LA50_RS05445 Genome accession   NZ_CP009418
Coordinates   992852..994045 (-) Length   397 a.a.
NCBI ID   WP_002216225.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3686     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 987852..999045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA50_RS05420 (LA50_05720) - 988151..988528 (-) 378 WP_002247931.1 helix-turn-helix domain-containing protein -
  LA50_RS05430 (LA50_05730) - 989219..989914 (+) 696 WP_002216227.1 hypothetical protein -
  LA50_RS05435 (LA50_05735) topA 989987..992293 (-) 2307 WP_002224383.1 type I DNA topoisomerase -
  LA50_RS05440 (LA50_05740) - 992365..992826 (-) 462 WP_002215351.1 DUF494 domain-containing protein -
  LA50_RS05445 (LA50_05745) dprA 992852..994045 (-) 1194 WP_002216225.1 DNA-processing protein DprA Machinery gene
  LA50_RS05450 (LA50_05750) - 994136..995413 (-) 1278 WP_002247929.1 sigma-54-dependent transcriptional regulator -
  LA50_RS05455 (LA50_05755) - 995406..997523 (-) 2118 WP_002247928.1 sensor histidine kinase -
  LA50_RS05460 (LA50_05760) - 997523..998122 (-) 600 WP_002216221.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 397 a.a.        Molecular weight: 42654.87 Da        Isoelectric Point: 6.3983

>NTDB_id=128995 LA50_RS05445 WP_002216225.1 992852..994045(-) (dprA) [Neisseria meningitidis strain NM3686]
MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSAPAEQVALAVRHKQAAEAWRNAEKRASARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPVVSGMASGIDT
AAHQGALQAEGGTIAVWGTGIDRIYPPSNKNLAYEIAERGLIVSEFPLDTRPFAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPRLLQNEGASSYSINKGMPEKRITAVQT
ASDQLSLPEGKMPSEKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=128995 LA50_RS05445 WP_002216225.1 992852..994045(-) (dprA) [Neisseria meningitidis strain NM3686]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGCTTCCTGCTGCTGCT
GCGCCGTTTCGGCAGCGCGTCAAACGCCCTGTCCGCACCGGCGGAACAGGTCGCCCTGGCGGTGCGGCACAAGCAGGCGG
CCGAGGCTTGGCGCAATGCGGAAAAACGCGCCTCGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGTCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCCGTCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCGTTGCAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GTCCAATAAAAACCTTGCTTATGAAATTGCCGAAAGGGGATTGATTGTCAGCGAGTTCCCTTTGGACACGCGTCCGTTTG
CAGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCACTGTCGCAAGTAACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGTTTGGCGGCAGAAATGGGGCGCGAGGTAATGGCGGTACCCGGTTCGATAGACAACCCGCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCGAAACTGACGGAATGCCTGGACGACATCCTGAACGAATGCCCGC
GGCTCTTGCAAAATGAGGGTGCTTCGTCATATTCTATAAATAAGGGAATGCCTGAAAAGCGCATCACTGCCGTTCAGACG
GCATCCGACCAGCTGTCTCTGCCTGAAGGCAAAATGCCGTCTGAAAAGACGGAGAACCGACCCGTCGGCGGCAGTATCTT
GGACAGGATGGGTTTCGACCCAGTTCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCG
CACTGTTGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

94.962

100

0.95

  dprA Neisseria meningitidis MC58

94.962

100

0.95

  dprA Neisseria gonorrhoeae strain FA1090

89.421

100

0.894

  dprA Neisseria gonorrhoeae MS11

89.169

100

0.892

  dprA Vibrio cholerae strain A1552

37.845

100

0.38

  dprA Vibrio campbellii strain DS40M4

36.99

98.741

0.365


Multiple sequence alignment