Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O165_RS22060 Genome accession   NZ_CP009365
Coordinates   4782575..4784062 (+) Length   495 a.a.
NCBI ID   WP_038707052.1    Uniprot ID   -
Organism   Pseudomonas soli strain SJ10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4777575..4789062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O165_RS22040 (O165_022510) - 4777850..4778113 (+) 264 WP_023632448.1 accessory factor UbiK family protein -
  O165_RS22045 (O165_022515) - 4778138..4778566 (+) 429 WP_031316465.1 molybdopterin-binding protein -
  O165_RS22050 (O165_022520) mgtA 4779368..4782079 (+) 2712 WP_038707051.1 magnesium-translocating P-type ATPase -
  O165_RS22055 - 4782090..4782524 (+) 435 WP_081941301.1 DUF2493 domain-containing protein -
  O165_RS22060 (O165_022530) comM 4782575..4784062 (+) 1488 WP_038707052.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O165_RS22065 (O165_022535) - 4784239..4784490 (+) 252 WP_023632855.1 DUF2790 domain-containing protein -
  O165_RS22070 (O165_022540) - 4784522..4785538 (+) 1017 WP_038707053.1 alpha/beta hydrolase -
  O165_RS22075 (O165_022545) - 4785765..4787552 (+) 1788 WP_038707054.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  O165_RS22080 (O165_022550) - 4787662..4788801 (-) 1140 WP_023629976.1 MFS transporter -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52895.75 Da        Isoelectric Point: 8.1966

>NTDB_id=128948 O165_RS22060 WP_038707052.1 4782575..4784062(+) (comM) [Pseudomonas soli strain SJ10]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVAALDGIECLGELALSGTLRPVQGVLPAALAARDAGRALVVPRENAEEASLANGLVVYAVGSL
RELAAHLNAQPAMSPYVAKGLLLEQRPYPDLSEVQGQIAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGQAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQRVAEARELQQRRQGCANAFLDLKGLRRHCPLDPVDQAWLEQACERLTLSLRAAHRLLKVARTLADLECAQSI
ARSHLAEALQYRPSA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=128948 O165_RS22060 WP_038707052.1 4782575..4784062(+) (comM) [Pseudomonas soli strain SJ10]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTGCAGGCTCCGGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCACGCTCACGCTGGTCGGCCTGCCAGAAACCACGGTCAAGGAGAGCAAGGATCGAGTCCGCAGCGCCATCG
TCAACTCTGGCCTGGACTATCCGGCACGGCGCATCACCCAGAGCCTCGCCCCAGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACTTGGCCATCGCGCTGGGTATCCTGGCCGCCAATGGCCAGGTACCGGTTGCCGCCCTCGACGGCATTGAATGCCT
GGGGGAACTGGCGCTGTCGGGTACGCTGCGCCCGGTGCAGGGTGTACTGCCTGCGGCATTGGCGGCGCGAGACGCGGGTC
GGGCGCTGGTAGTACCCAGGGAGAATGCCGAGGAAGCCAGCCTGGCCAACGGCCTGGTGGTGTACGCGGTGGGGAGTCTG
CGAGAACTGGCAGCCCACCTGAATGCTCAACCGGCAATGTCACCCTACGTGGCGAAAGGCCTGTTACTGGAGCAACGCCC
CTACCCGGACCTCAGCGAAGTTCAAGGCCAGATCGCTGCCAAGCGGGCGCTGTTGGTCGCCGCAGCTGGTGCCCACAACC
TGCTGCTCTCCGGCCCGCCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCGCCGCTGGACGAG
CGCGAGGCGCTGGAGGTGGCGGCGATCCGCTCGGTCAGTGGCCAAGCACCGCTCGATTGCTGGCCACAGCGGCCGTTTCG
CCATCCCCACCACTCGGCCTCCGGCCCGGCGCTGGTGGGTGGTGGCAGCCGACCGCAACCCGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTCCTCGATGAGCTGCCCGAATTTGAACGACGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGGTAGCTCGGGCCAAGGACCGGGTACGCTTCCCGGCGCGCTTTCAACTGGTGGCAGCCATGAACCCCTG
TCCTTGCGGCTATCTGGGTGACCCGACCGGCCGTTGCCGGTGCAGCAGCGAGCAGATCCAGCGCTACCGCAACAAGTTGT
CCGGCCCCCTGCTCGACCGCATCGACCTGCACCTGACAGTGGCCCGGGAAAGTACCGTGCTGACCCACCAGCCCAGCGGG
GAGACCAGCGCCAGTGTTGGCCAGCGGGTGGCCGAGGCACGGGAGCTGCAACAGCGCCGGCAGGGCTGCGCCAATGCCTT
CCTCGATCTCAAGGGGCTGCGCCGGCATTGCCCGCTGGATCCGGTCGACCAGGCCTGGCTGGAGCAGGCCTGCGAACGGC
TGACGCTGTCGTTACGGGCAGCACACCGGCTGTTGAAGGTGGCCCGCACCCTGGCGGACCTGGAGTGCGCGCAATCCATC
GCCAGGTCGCACCTGGCGGAGGCGCTGCAGTACCGGCCCAGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.91

100

0.554
  comM Haemophilus influenzae Rd KW20

54.2

100

0.547
  comM Vibrio cholerae strain A1552

54.545

100

0.545
  comM Glaesserella parasuis strain SC1401

53.386

100

0.541
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.111

100

0.489

Multiple sequence alignment