Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JV59_RS15120 Genome accession   NZ_CP009264
Coordinates   3238348..3239871 (-) Length   507 a.a.
NCBI ID   WP_038514200.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3233348..3244871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS15100 (JV59_39125) - 3234569..3235555 (+) 987 WP_038514192.1 serine/threonine protein kinase -
  JV59_RS15105 (JV59_39130) - 3235586..3236206 (+) 621 WP_006957502.1 thiol:disulfide interchange protein DsbA/DsbL -
  JV59_RS15110 (JV59_39135) - 3236262..3237146 (-) 885 WP_038514195.1 acyltransferase -
  JV59_RS15115 (JV59_39140) - 3237330..3238316 (+) 987 WP_038514198.1 DUF2860 domain-containing protein -
  JV59_RS15120 (JV59_39145) comM 3238348..3239871 (-) 1524 WP_038514200.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JV59_RS15125 (JV59_39150) ilvG 3240376..3242022 (+) 1647 WP_038514203.1 acetolactate synthase 2 catalytic subunit -
  JV59_RS15130 (JV59_39155) ilvM 3242024..3242308 (+) 285 WP_038514206.1 acetolactate synthase 2 small subunit -
  JV59_RS15135 (JV59_39160) ilvE 3242321..3243265 (+) 945 WP_019273987.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55120.22 Da        Isoelectric Point: 8.0873

>NTDB_id=127871 JV59_RS15120 WP_038514200.1 3238348..3239871(-) (comM) [Vibrio coralliilyticus strain OCN014]
MGLAIIYSRASVGVEAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFKFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIPVSGLAEKEFVGELALSGELRGVKGVLPAALASNKAQRSLVVPHYNGDQAALVGEEQHKSAQSL
LEVCADLCGQQKLSLHQTQNLHRAVDNGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINALNWKRRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTEVVKQRVLNARVCMLERSNKVNALLGSREIEEYCPLKKEDAQFLESALHRLGLSIRAYHRIIKVARTIADLDGQSQ
IARNHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=127871 JV59_RS15120 WP_038514200.1 3238348..3239871(-) (comM) [Vibrio coralliilyticus strain OCN014]
ATGGGTTTAGCCATTATTTACAGTCGGGCATCGGTGGGGGTTGAAGCACCACCTGTGACGGTAGAGGTACATATCAGTAA
TGGAATGCCGGGGTTCACTCTGGTGGGATTACCGGAAACCACGGTCAAAGAATCACGTGACCGAGTGCGCAGCGCGATCA
TCAACTCTCGATTTAAATTTCCAGCCAAGCGAATCACGGTCAATCTTGCACCCGCTGATCTGCCCAAGGAAGGAGGGCGC
TTTGATCTGCCGATTGCACTTGGCATTCTCGCTGCTTCAGATCAGATCCCAGTCAGCGGTTTGGCGGAAAAAGAATTCGT
TGGTGAACTGGCTTTGTCGGGGGAACTGCGAGGAGTGAAAGGGGTATTGCCTGCAGCGCTGGCATCCAACAAAGCACAGC
GAAGCTTGGTTGTACCTCATTACAACGGCGATCAAGCCGCGTTAGTGGGCGAAGAACAGCATAAATCTGCCCAAAGCTTA
CTAGAAGTGTGCGCCGATCTTTGTGGCCAACAAAAACTTAGCCTGCATCAAACACAAAATCTGCACCGAGCGGTGGATAA
TGGCCGCGACTTACAAGACATCATTGGTCAGCAGCAAGGTAAACGTGCTTTGGAAATTGCTGCGGCAGGCAACCATAACT
TGTTATTTTTAGGCCCGCCAGGGACGGGAAAAACCATGCTTGCCTCGCGTTTGTGCGATTTGCTGCCGGAGATGAGTGAC
GACGAAGCAATGGAAACGGCGTCTGTTGCGTCACTAACTCAGCAGGAAATCAATGCGCTTAACTGGAAGCGACGCCCCTT
TCGTGCACCGCACCATTCAAGCTCAATGGCAGCGCTCGTCGGCGGAGGCACAATCCCAAGGCCGGGTGAAATTTCTTTGG
CGCACAATGGGTTGCTGTTTCTTGATGAAATGCCAGAGTTTGAACGTAAGGTGCTTGACTCATTGCGTGAGCCACTGGAA
TCCGGGGAGATTATTATCTCGCGTGCTCAGGGCAAAACTCGTTTCCCTGCACGCTTTCAGCTGGTGGGCGCCCTTAACCC
GAGTCCGACGGGGTATTACGAAGGTAATCAGTCGAGAGTGAATCCACAAACCATTTTACGTTATCTGAGTCGGTTATCTG
GCCCTCTACTGGATCGTTTTGATATGTCACTTGAGATCCCAGCGTTACCTAAAGGTACTTTGGCCGAAGGGGGCGATCGT
GGTGAACCTACAGAAGTAGTTAAGCAAAGGGTTCTCAATGCCAGAGTCTGTATGCTGGAGCGCTCCAATAAGGTTAATGC
ACTGTTGGGCAGTCGCGAAATAGAGGAGTACTGTCCATTGAAAAAAGAAGATGCGCAGTTTTTGGAGAGTGCGCTGCACC
GACTTGGGTTGTCAATTCGGGCTTATCACCGAATCATTAAGGTCGCGCGCACTATTGCTGATTTAGATGGTCAGTCGCAG
ATTGCTCGCAATCACCTGGCTGAAGCGTTGGGATATCGGGCAATGGACCGATTGCTTAAGCAATTGACCGCTCAGGCGGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.982

100

0.87
  comM Vibrio campbellii strain DS40M4

86.193

100

0.862
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.327

100

0.651
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment