Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JV59_RS00670 | Genome accession | NZ_CP009264 |
| Coordinates | 130774..131322 (+) | Length | 182 a.a. |
| NCBI ID | WP_006958299.1 | Uniprot ID | A0A097QHM9 |
| Organism | Vibrio coralliilyticus strain OCN014 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 125774..136322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JV59_RS00655 (JV59_26285) | uvrA | 125894..128715 (-) | 2822 | Protein_119 | excinuclease ABC subunit UvrA | - |
| JV59_RS00660 (JV59_26290) | galU | 128855..129727 (-) | 873 | WP_006958301.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| JV59_RS00665 (JV59_26295) | qstR | 129845..130492 (-) | 648 | WP_006958300.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| JV59_RS00670 (JV59_26300) | ssb | 130774..131322 (+) | 549 | WP_006958299.1 | single-stranded DNA-binding protein | Machinery gene |
| JV59_RS00675 (JV59_00650) | csrD | 131470..133485 (+) | 2016 | WP_006958298.1 | RNase E specificity factor CsrD | - |
| JV59_RS00680 (JV59_26305) | - | 133482..134921 (+) | 1440 | WP_038509424.1 | MSHA biogenesis protein MshI | - |
| JV59_RS00685 (JV59_26310) | gspM | 134921..135571 (+) | 651 | WP_038509426.1 | type II secretion system protein GspM | - |
| JV59_RS00690 (JV59_26315) | - | 135564..135887 (+) | 324 | WP_038509428.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20140.20 Da Isoelectric Point: 4.9269
>NTDB_id=127842 JV59_RS00670 WP_006958299.1 130774..131322(+) (ssb) [Vibrio coralliilyticus strain OCN014]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=127842 JV59_RS00670 WP_006958299.1 130774..131322(+) (ssb) [Vibrio coralliilyticus strain OCN014]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTGTTTGGCAAGCTGGCTGAAGTTGCAGGTGAGTACTTACGCAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAACAACCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTGTTTGGCAAGCTGGCTGAAGTTGCAGGTGAGTACTTACGCAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAACAACCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.978 |
100 |
0.819 |
| ssb | Glaesserella parasuis strain SC1401 |
55.44 |
100 |
0.588 |
| ssb | Neisseria meningitidis MC58 |
44.865 |
100 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
45.604 |
100 |
0.456 |