Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | VV93_RS05280 | Genome accession | NZ_CP009261 |
| Coordinates | 1117944..1118246 (+) | Length | 100 a.a. |
| NCBI ID | WP_013572179.1 | Uniprot ID | A0AAN1PPQ8 |
| Organism | Vibrio vulnificus strain 93U204 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1112944..1123246
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VV93_RS05265 (VV93_v1c10270) | lon | 1112958..1115309 (+) | 2352 | WP_011078147.1 | endopeptidase La | - |
| VV93_RS05270 (VV93_v1c10280) | - | 1115503..1115775 (+) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| VV93_RS05275 (VV93_v1c10290) | ppiD | 1115952..1117811 (+) | 1860 | WP_039553148.1 | peptidylprolyl isomerase | - |
| VV93_RS05280 (VV93_v1c10300) | comEA | 1117944..1118246 (+) | 303 | WP_013572179.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| VV93_RS05285 (VV93_v1c10310) | rrtA | 1118293..1118877 (-) | 585 | WP_011078143.1 | rhombosortase | - |
| VV93_RS05290 (VV93_v1c10320) | - | 1118857..1119465 (+) | 609 | WP_039553150.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| VV93_RS05295 (VV93_v1c10330) | - | 1119487..1120818 (-) | 1332 | WP_039553152.1 | anti-phage deoxyguanosine triphosphatase | - |
| VV93_RS05300 (VV93_v1c10340) | yfbR | 1120824..1121372 (-) | 549 | WP_231846899.1 | 5'-deoxynucleotidase | - |
| VV93_RS05305 (VV93_v1c10350) | - | 1121489..1122703 (-) | 1215 | WP_011080966.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10900.72 Da Isoelectric Point: 9.6573
>NTDB_id=127800 VV93_RS05280 WP_013572179.1 1117944..1118246(+) (comEA) [Vibrio vulnificus strain 93U204]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=127800 VV93_RS05280 WP_013572179.1 1117944..1118246(+) (comEA) [Vibrio vulnificus strain 93U204]
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGTATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGTATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
52.041 |
98 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
52.041 |
98 |
0.51 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60 |
0.36 |