Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IX88_RS03280 Genome accession   NZ_CP009256
Coordinates   687981..689468 (-) Length   495 a.a.
NCBI ID   WP_038405420.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 682981..694468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS18990 - 683668..683838 (+) 171 WP_001984583.1 hypothetical protein -
  IX88_RS03260 (IX88_03300) - 683895..684707 (+) 813 WP_000975212.1 TorF family putative porin -
  IX88_RS03265 (IX88_03305) - 684750..685628 (-) 879 WP_000772982.1 dihydrodipicolinate synthase family protein -
  IX88_RS03270 (IX88_03310) - 685644..686420 (-) 777 WP_031999563.1 aldolase -
  IX88_RS03275 (IX88_03315) - 686532..687966 (+) 1435 Protein_635 PLP-dependent aminotransferase family protein -
  IX88_RS03280 (IX88_03320) comM 687981..689468 (-) 1488 WP_038405420.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IX88_RS03285 (IX88_03325) - 689534..689761 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  IX88_RS03290 (IX88_03330) glnK 690041..690379 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  IX88_RS03295 (IX88_03335) - 690437..691834 (+) 1398 WP_031999565.1 ammonium transporter -
  IX88_RS03300 (IX88_03340) nrdR 691993..692451 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  IX88_RS03305 (IX88_03345) ribD 692467..693552 (+) 1086 WP_001292498.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54467.40 Da        Isoelectric Point: 7.4186

>NTDB_id=127660 IX88_RS03280 WP_038405420.1 687981..689468(-) (comM) [Acinetobacter baumannii strain AB31]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYVYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=127660 IX88_RS03280 WP_038405420.1 687981..689468(-) (comM) [Acinetobacter baumannii strain AB31]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCCGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTAACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTTTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACGCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGAC
CGTTACTTGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGTTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTAGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAACCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.9

100

0.503
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.467

Multiple sequence alignment