Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IX46_RS02725 Genome accession   NZ_CP009253
Coordinates   570314..570817 (-) Length   167 a.a.
NCBI ID   WP_053940466.1    Uniprot ID   -
Organism   Buchnera aphidicola (Aphis glycines) strain BAg     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 565314..575817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX46_RS02705 (IX46_02800) - 565936..567522 (-) 1587 WP_053940462.1 peptide chain release factor 3 -
  IX46_RS02710 (IX46_02805) ansA 567705..568721 (+) 1017 WP_053940463.1 asparaginase -
  IX46_RS02715 (IX46_02810) - 568756..569331 (-) 576 WP_053940464.1 NfuA family Fe-S biogenesis protein -
  IX46_RS02720 (IX46_02815) bioH 569465..570241 (+) 777 WP_071880125.1 pimeloyl-ACP methyl ester esterase BioH -
  IX46_RS02725 (IX46_02820) ssb 570314..570817 (-) 504 WP_053940466.1 single-stranded DNA-binding protein Machinery gene
  IX46_RS02730 (IX46_02825) dnaB 571610..573007 (+) 1398 WP_053940467.1 replicative DNA helicase -
  IX46_RS02735 (IX46_02830) gshB 573086..574045 (+) 960 WP_144417494.1 glutathione synthase -
  IX46_RS02740 (IX46_02835) ruvX 574057..574466 (+) 410 Protein_522 Holliday junction resolvase RuvX -
  IX46_RS02745 (IX46_02840) - 574493..575167 (+) 675 WP_071880119.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 19131.47 Da        Isoelectric Point: 6.6511

>NTDB_id=127638 IX46_RS02725 WP_053940466.1 570314..570817(-) (ssb) [Buchnera aphidicola (Aphis glycines) strain BAg]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGFDRYTTEIIVNIGGTMQMLGNRNSNSHNIHENNNILKTKNIETTEISKNLEKHKLKQEQMNSPDLD
FDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=127638 IX46_RS02725 WP_053940466.1 570314..570817(-) (ssb) [Buchnera aphidicola (Aphis glycines) strain BAg]
ATGGCGAGTCGAGGTGTAAACAAGGTAATTTTAATCGGTCATTTAGGTCAAGACCCAGAAGTACGATATATGCCTAATGG
CAATGCAGTAGTAAATATGACACTTGCAACTTCAGAAAATTGGAAAGATAAAAATACAGGTGAAAATAAAGAAAAAACAG
AATGGCATAGAGTTGTTTTATTTGGAAAATTAGCTGAAATAGCTGGAGAATATTTACGAAAGGGTTCGCAAGTATATATT
GAAGGTTCTCTTCAAACAAGAAAATGGCAAGACCAAAATGGTTTTGATAGATATACAACAGAAATTATAGTAAATATTGG
TGGTACAATGCAAATGCTTGGAAACCGAAATTCTAATTCTCATAATATACATGAAAATAATAATATTTTGAAAACAAAAA
ATATAGAAACTACCGAAATATCTAAAAATTTAGAAAAACATAAATTAAAACAGGAGCAAATGAATTCTCCAGATCTAGAT
TTTGATGATGAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.623
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.509
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.443
  ssb Neisseria meningitidis MC58

42.045

100

0.443

Multiple sequence alignment