Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | JT17_RS05920 | Genome accession | NZ_CP009237 |
| Coordinates | 1224490..1224954 (-) | Length | 154 a.a. |
| NCBI ID | WP_005711781.1 | Uniprot ID | K4JWE9 |
| Organism | Glaesserella parasuis strain KL0318 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1219490..1229954
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT17_RS05900 (JT17_06105) | dapE | 1219986..1221119 (-) | 1134 | WP_044009242.1 | succinyl-diaminopimelate desuccinylase | - |
| JT17_RS05905 (JT17_06110) | - | 1221203..1221871 (-) | 669 | WP_044009243.1 | prepilin peptidase | - |
| JT17_RS05910 (JT17_06115) | pilC | 1221868..1223064 (-) | 1197 | WP_005711777.1 | type II secretion system F family protein | Machinery gene |
| JT17_RS05915 (JT17_06120) | pilB | 1223057..1224442 (-) | 1386 | WP_044009244.1 | GspE/PulE family protein | Machinery gene |
| JT17_RS05920 (JT17_06125) | pilA | 1224490..1224954 (-) | 465 | WP_005711781.1 | pilin | Machinery gene |
| JT17_RS05925 (JT17_06130) | radA | 1225142..1226518 (+) | 1377 | WP_021110380.1 | DNA repair protein RadA | - |
| JT17_RS05930 (JT17_06135) | gmk | 1226571..1227197 (-) | 627 | WP_035491622.1 | guanylate kinase | - |
| JT17_RS05935 (JT17_06140) | - | 1227266..1228237 (-) | 972 | WP_044009245.1 | IS110 family transposase | - |
| JT17_RS05940 (JT17_06145) | gpt | 1228638..1229117 (-) | 480 | WP_005714020.1 | xanthine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16379.04 Da Isoelectric Point: 9.3428
>NTDB_id=127479 JT17_RS05920 WP_005711781.1 1224490..1224954(-) (pilA) [Glaesserella parasuis strain KL0318]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGQKATP
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGQKATP
Nucleotide
Download Length: 465 bp
>NTDB_id=127479 JT17_RS05920 WP_005711781.1 1224490..1224954(-) (pilA) [Glaesserella parasuis strain KL0318]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCAAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGCAGAAAGCTACACCGTAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCAAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGCAGAAAGCTACACCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
100 |
100 |
1 |
| pilA | Haemophilus influenzae Rd KW20 |
55.034 |
96.753 |
0.532 |
| pilA | Haemophilus influenzae 86-028NP |
54.362 |
96.753 |
0.526 |