Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   SAH002_RS06895 Genome accession   NZ_CP011329
Coordinates   1372676..1374784 (+) Length   702 a.a.
NCBI ID   WP_000002814.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain H002     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1367676..1379784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAH002_RS06865 (SAH002_06880) - 1367817..1368200 (-) 384 WP_000895333.1 hypothetical protein -
  SAH002_RS06870 (SAH002_06885) - 1368211..1368639 (-) 429 WP_001050386.1 hypothetical protein -
  SAH002_RS06875 (SAH002_06890) dcm 1368623..1369978 (-) 1356 WP_050265405.1 DNA (cytosine-5-)-methyltransferase -
  SAH002_RS06880 (SAH002_06895) - 1370127..1370945 (-) 819 WP_000822785.1 replication initiator protein A -
  SAH002_RS11675 - 1370942..1371115 (-) 174 WP_001168336.1 hypothetical protein -
  SAH002_RS06885 (SAH002_06900) rplL 1371314..1371679 (-) 366 WP_001196973.1 50S ribosomal protein L7/L12 -
  SAH002_RS06890 (SAH002_06905) rplJ 1371743..1372243 (-) 501 WP_001287288.1 50S ribosomal protein L10 -
  SAH002_RS06895 (SAH002_06910) clpC 1372676..1374784 (+) 2109 WP_000002814.1 AAA family ATPase Regulator
  SAH002_RS06900 (SAH002_06915) mmuM 1374877..1375821 (-) 945 Protein_1305 homocysteine S-methyltransferase -
  SAH002_RS06905 (SAH002_06920) - 1375826..1377202 (-) 1377 Protein_1306 amino acid permease -
  SAH002_RS06910 (SAH002_06925) - 1377332..1377982 (-) 651 WP_000120088.1 HXXEE domain-containing protein -
  SAH002_RS11160 - 1378140..1378643 (-) 504 WP_000645481.1 HXXEE domain-containing protein -
  SAH002_RS06920 (SAH002_06935) - 1378735..1379283 (+) 549 WP_000140663.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77750.51 Da        Isoelectric Point: 4.8125

>NTDB_id=127477 SAH002_RS06895 WP_000002814.1 1372676..1374784(+) (clpC) [Streptococcus agalactiae strain H002]
MANNNFYNRDPFGNMDDIFNSLMGNMGGYNSENKRYLINGREVTPEEFSQYRQTGKLPGQELNNQNTPTNQVSADSVLTK
LGTNLTDQARQHLLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIINGDVPAAIKNKEIISIDIS
SLEAGTQYRGSFEENIQNIIKEVKETGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRNLYEQHHNVVLPDSVLKAAVDLSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDLKSLEKEIAEQRDKQEKAVNTEDFEEALKVKTRIEELQNQIDNHTEGQKVTATINDIAMSIERLTGVPVSNM
GASDIERLKELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAIVR
LDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPEFLNRFNGVIEFSHLSKDDLSEIVDLMLDEVNQTISKKGIDLV
VDENVKSHLIELGYDEAMGVRPLRRVIEQEIRDRITDYYLDHTDVKHLKANLQDGQIVISER

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=127477 SAH002_RS06895 WP_000002814.1 1372676..1374784(+) (clpC) [Streptococcus agalactiae strain H002]
ATGGCAAATAATAATTTTTATAATCGTGACCCTTTTGGAAATATGGATGATATTTTTAATTCTCTAATGGGAAATATGGG
GGGCTATAACAGTGAGAATAAGCGATACTTAATCAATGGACGGGAAGTTACTCCTGAAGAATTCAGTCAATATCGTCAAA
CTGGAAAACTCCCCGGTCAAGAGCTAAATAACCAAAACACTCCTACAAACCAAGTCTCTGCAGATAGTGTTTTGACTAAA
TTAGGAACTAATTTAACCGATCAAGCACGTCAGCATTTGCTAGATCCAGTTATTGGACGAAACAAAGAAATTCAGGAAAC
TGCAGAAATTCTAGCTCGTCGTACTAAAAATAATCCTGTTCTGGTTGGTGATGCAGGTGTTGGTAAAACAGCTGTTATTG
AAGGTTTGGCACAAGCAATTATAAATGGTGATGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCGATAGATATTTCT
AGCCTTGAAGCTGGCACCCAATATAGGGGTAGTTTTGAAGAAAATATTCAAAATATCATAAAAGAAGTTAAGGAAACAGG
AAATATTATTCTCTTCTTTGATGAAATACACCAAATATTAGGAGCCGGTTCAACTGGTGGTGATAGTGGCTCTAAGGGGC
TCGCAGATATACTTAAGCCTGCACTTTCACGTGGTGAGTTAACGGTTATAGGTGCAACTACTCAAGATGAATATCGTAAC
ACCATTCTCAAGAATGCTGCCTTAGCACGTCGCTTTAACGAAGTTAAAGTCAATGCACCTTCTGCACAAGATACTTTCAA
TATCCTTATGGGGATAAGAAACCTCTATGAGCAACATCATAATGTTGTTTTACCTGACTCTGTTTTGAAAGCAGCTGTAG
ATTTATCTATTCAATACATCCCACAAAGAAGTCTCCCTGATAAAGCAATTGACCTTATTGATATGACTGCTGCACACCTA
GCTGCGCAACATCCCGTAACTGACCTTAAATCCTTAGAAAAAGAAATCGCTGAGCAAAGAGACAAGCAAGAAAAAGCTGT
CAATACTGAAGATTTTGAAGAAGCTCTTAAGGTCAAGACACGCATTGAAGAGTTACAAAACCAGATTGATAATCATACCG
AAGGACAAAAAGTCACTGCAACTATCAACGATATCGCTATGTCAATTGAGCGTCTAACTGGAGTTCCTGTATCAAATATG
GGTGCTAGTGATATTGAACGCTTAAAAGAACTTGGCAATCGTCTAAAAGGTAAAGTCATTGGTCAAAATGATGCTGTTGA
GGCAGTTGCGAGAGCTATTCGCCGAAATCGTGCTGGTTTCGATGATGGTAATCGTCCGATTGGTAGCTTTCTATTTGTTG
GACCAACTGGAGTTGGTAAAACCGAGCTAGCAAAGCAATTAGCTTTTGATATGTTCGGATCAAAGGATGCTATCGTTAGA
CTTGATATGTCTGAATATAATGATCGTACAGCAGTTTCTAAGCTAATTGGAGCGACTGCTGGTTACGTTGGTTATGACGA
CAATAGTAATACACTAACAGAACGTATCCGTCGAAATCCTTATTCTATTGTTCTTCTTGATGAAATCGAAAAAGCTGACC
CGCAAGTTATCACGCTTCTCCTTCAAGTTCTAGATGATGGCCGTTTAACTGATGGTCAAGGAAACACTATTAACTTTAAA
AATACTGTTATCATTGCAACCTCAAATGCAGGTTTTGGAAACGAAGCATTTACAGGTGACAGCGATAAAGACTTGAAAAT
TATGGAACGAATTTCTCCATATTTCCGTCCAGAATTTCTAAATCGTTTCAATGGTGTTATTGAATTCTCTCACCTAAGCA
AAGATGACTTAAGCGAAATTGTAGATTTGATGCTTGATGAAGTTAACCAAACAATTAGCAAAAAAGGAATTGACCTTGTG
GTAGATGAAAATGTTAAATCACACTTAATTGAACTGGGTTATGACGAAGCAATGGGAGTACGTCCATTGCGCCGTGTCAT
CGAGCAAGAAATTCGAGATCGCATCACAGACTACTATCTCGATCATACAGACGTTAAACACCTAAAAGCTAATTTGCAAG
ATGGCCAAATCGTCATTTCTGAAAGATAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(445-604)

AAA lid domain (AAA_lid_9)

(261-358)

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(612-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

47.202

99.288

0.469
  clpE Streptococcus pneumoniae Rx1

49.139

91.026

0.447
  clpE Streptococcus pneumoniae D39

49.139

91.026

0.447
  clpE Streptococcus pneumoniae R6

49.139

91.026

0.447
  clpE Streptococcus pneumoniae TIGR4

49.139

91.026

0.447
  clpE Streptococcus mutans UA159

49.367

90.028

0.444
  clpC Bacillus subtilis subsp. subtilis str. 168

44.478

95.442

0.425
  clpC Streptococcus pneumoniae TIGR4

42.994

89.459

0.385
  clpC Streptococcus pneumoniae Rx1

42.994

89.459

0.385
  clpC Streptococcus pneumoniae D39

42.994

89.459

0.385
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

42.022

90.171

0.379
  clpC Streptococcus thermophilus LMD-9

42.857

86.752

0.372
  clpC Streptococcus thermophilus LMG 18311

42.693

86.752

0.37
  clpC Streptococcus mutans UA159

40.498

91.453

0.37

Multiple sequence alignment