Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NJ8700_RS08905 Genome accession   NZ_CP009230
Coordinates   1906313..1907848 (+) Length   511 a.a.
NCBI ID   WP_005701928.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1901313..1912848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS08880 (NJ8700_09070) - 1902021..1902257 (+) 237 WP_012771867.1 hypothetical protein -
  NJ8700_RS08885 (NJ8700_09075) - 1902564..1902965 (-) 402 WP_005703478.1 pyrimidine dimer DNA glycosylase/endonuclease V -
  NJ8700_RS08890 (NJ8700_09080) - 1903158..1904525 (-) 1368 WP_044055272.1 patatin-like phospholipase family protein -
  NJ8700_RS08895 (NJ8700_09085) deoC 1904759..1905430 (+) 672 WP_012771869.1 deoxyribose-phosphate aldolase -
  NJ8700_RS08900 (NJ8700_09090) deoR 1905455..1906204 (+) 750 WP_005701929.1 DNA-binding transcriptional repressor DeoR -
  NJ8700_RS08905 (NJ8700_09095) comM 1906313..1907848 (+) 1536 WP_005701928.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NJ8700_RS08910 (NJ8700_09100) - 1908303..1908755 (+) 453 WP_225791923.1 hypothetical protein -
  NJ8700_RS08915 (NJ8700_09105) - 1908893..1909270 (+) 378 WP_225791922.1 hypothetical protein -
  NJ8700_RS08920 (NJ8700_09110) - 1909333..1909713 (+) 381 WP_005701924.1 hypothetical protein -
  NJ8700_RS08925 (NJ8700_09115) - 1909802..1911355 (+) 1554 WP_230454717.1 DUF4384 domain-containing protein -
  NJ8700_RS08930 (NJ8700_09120) - 1911373..1912458 (+) 1086 WP_005701922.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56083.56 Da        Isoelectric Point: 9.4972

>NTDB_id=127413 NJ8700_RS08905 WP_005701928.1 1906313..1907848(+) (comM) [Aggregatibacter aphrophilus NJ8700]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPNFTLVGLPEKTVKEAQDRVRSALLNAEFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGYIDAEKLKQFEFIGELALTGQLRAVHGVIPAILAAKKAKRKCIIAYGNANEASLVSDQETYFAHSL
LEVVQFLNNQGELPLAKDMTAQSAVDFSGENQKDLTDIIGQQHAKRALIIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDQEAIETASVASLVQNELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
NTERGEPSAIVREKVLKTRNIQLERAGKINAHLTGKEIERDCKLESKDALFLESALTKLGLSVRAYHRILKVSRTIADLE
GEKCITQKHLAEALGYRAMDRFLQRLSKESS

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=127413 NJ8700_RS08905 WP_005701928.1 1906313..1907848(+) (comM) [Aggregatibacter aphrophilus NJ8700]
ATGTCTTTAGCCATCGTTTACAGTCGTGCTTCAATGGGCGTGCAGGCGCCTTTAGTGACGATTGAAGTGCATTTAAGTAA
CGGCAAGCCTAACTTTACGTTGGTTGGATTGCCGGAAAAAACTGTTAAAGAAGCACAAGATCGGGTTCGTAGTGCATTGC
TGAATGCCGAATTCAAATATCCCGCCAAACGCATTACCGTCAATCTCGCACCGGCTGATTTACCCAAAGAAGGTGGACGT
TTTGACTTGCCTATTGCTATCGGTATGCTTGCGGCTTCAGGCTATATTGACGCGGAAAAATTAAAACAATTTGAATTTAT
CGGTGAGTTGGCATTAACCGGTCAACTCCGCGCGGTACATGGCGTAATTCCTGCCATTTTGGCTGCCAAAAAAGCAAAAC
GAAAATGTATTATCGCTTATGGCAATGCCAATGAGGCCTCATTGGTCTCCGATCAAGAAACATATTTTGCCCATTCATTG
CTTGAAGTTGTGCAATTTCTCAATAATCAAGGGGAGCTGCCTTTGGCAAAGGACATGACGGCTCAAAGTGCGGTGGATTT
TAGCGGCGAAAATCAAAAAGATCTCACGGATATTATCGGTCAACAACACGCCAAACGGGCGCTGATTATTGCCGCAGCCG
GGCAACATAACTTGTTATTTCTGGGCCCACCCGGCACCGGTAAAACCATGCTTGCCAGTCGTTTAACGGGGCTGTTACCG
GAAATGACCGACCAAGAGGCCATCGAAACCGCCTCCGTTGCCAGTCTCGTGCAAAATGAATTGAATTTTCATAACTGGAA
ACAACGCCCTTTCCGCGCCCCACATCACAGCGCGTCCACGCCGGCTTTAGTGGGAGGCGGCACAATTCCAAAACCTGGCG
AAATTTCTCTCGCGCATAATGGTGTGCTTTTTTTAGACGAATTGCCTGAATTTGAACGTAAGGTGCTGGATGCTTTACGC
CAACCGTTAGAAAGTGGAGAAATCATTATTTCGCGCGCCAATGCCAAAATTCAGTTTCCGGCAAGGTTTCAGCTTATCGC
GGCGATGAACCCAAGCCCGACAGGGCATTATCAAGGGACACACAATCGTACGTCGCCGCAACAAATCATGCGGTATTTAA
ATCGTCTCTCCGGCCCATTTCTGGATCGTTTTGATTTATCCATTGAAGTGCCTTTGTTACCACAAGGCAGTTTGCAAAAT
AATACGGAGCGTGGCGAACCTAGCGCAATCGTCCGTGAAAAAGTGTTAAAAACCCGCAACATCCAATTAGAACGTGCAGG
CAAAATAAACGCCCACTTAACCGGTAAAGAAATTGAACGCGATTGTAAACTGGAAAGCAAAGACGCGTTATTTCTTGAAA
GTGCTCTGACCAAACTGGGGCTTTCCGTACGGGCTTACCACCGAATCTTAAAAGTGTCACGCACCATTGCTGATTTAGAA
GGTGAAAAATGCATTACCCAAAAACATTTGGCTGAAGCATTAGGCTACCGAGCAATGGATCGGTTTTTACAGAGGCTATC
GAAAGAATCAAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

86.982

99.217

0.863
  comM Glaesserella parasuis strain SC1401

78.474

100

0.785
  comM Vibrio cholerae strain A1552

65.294

99.804

0.652
  comM Vibrio campbellii strain DS40M4

64.466

100

0.65
  comM Legionella pneumophila str. Paris

51.389

98.63

0.507
  comM Legionella pneumophila strain ERS1305867

51.389

98.63

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.173

100

0.474

Multiple sequence alignment