Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | JL26_RS08180 | Genome accession | NZ_CP009158 |
| Coordinates | 1634996..1635454 (+) | Length | 152 a.a. |
| NCBI ID | WP_038514693.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SH03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1629996..1640454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL26_RS08160 (JL26_08400) | gpt | 1630874..1631353 (+) | 480 | WP_005714020.1 | xanthine phosphoribosyltransferase | - |
| JL26_RS08165 (JL26_08405) | - | 1631713..1632684 (+) | 972 | WP_012621529.1 | IS110 family transposase | - |
| JL26_RS08170 (JL26_08410) | gmk | 1632753..1633379 (+) | 627 | WP_021113158.1 | guanylate kinase | - |
| JL26_RS08175 (JL26_08415) | radA | 1633432..1634808 (-) | 1377 | WP_021114521.1 | DNA repair protein RadA | - |
| JL26_RS08180 (JL26_08420) | pilA | 1634996..1635454 (+) | 459 | WP_038514693.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| JL26_RS08185 (JL26_08425) | pilB | 1635502..1636887 (+) | 1386 | WP_038514696.1 | GspE/PulE family protein | Machinery gene |
| JL26_RS11470 (JL26_08430) | - | 1636880..1638075 (+) | 1196 | Protein_1640 | type II secretion system F family protein | - |
| JL26_RS08200 (JL26_08435) | - | 1638072..1638740 (+) | 669 | WP_038514704.1 | prepilin peptidase | - |
| JL26_RS08205 (JL26_08440) | dapE | 1638824..1639957 (+) | 1134 | WP_038514707.1 | succinyl-diaminopimelate desuccinylase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15970.46 Da Isoelectric Point: 9.0982
>NTDB_id=127127 JL26_RS08180 WP_038514693.1 1634996..1635454(+) (pilA) [Glaesserella parasuis strain SH03]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTGALTNCTGGSNGV
QANKTDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGTKATQ
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTGALTNCTGGSNGV
QANKTDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGTKATQ
Nucleotide
Download Length: 459 bp
>NTDB_id=127127 JL26_RS08180 WP_038514693.1 1634996..1635454(+) (pilA) [Glaesserella parasuis strain SH03]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAGGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGTGGCTGG
TAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAAGCTGTC
GAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAGGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGTGGCTGG
TAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAAGCTGTC
GAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
85.621 |
100 |
0.862 |
| pilA | Haemophilus influenzae 86-028NP |
58.784 |
97.368 |
0.572 |
| pilA | Haemophilus influenzae Rd KW20 |
56.757 |
97.368 |
0.553 |
| comP | Acinetobacter baylyi ADP1 |
45.517 |
95.395 |
0.434 |